Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTTTCATGATAGATATC  >  BK006934/354398‑354960
                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                
TATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCG                                                                                                                                                                                                                                                                         >  SRR13385772.91547/1‑300 (MQ=60)
                CTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGC                                                                                                                                                                                                                                                        >  SRR13385772.914646/1‑301 (MQ=60)
                                                                  ACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCCAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGCAATTACGTTGTGGTTAAGAATACAATGGCAT                                                                                                                                                                                                      >  SRR13385772.78806/1‑301 (MQ=60)
                                                                  ACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCAT                                                                                                                                                                                                      <  SRR13385772.157547/301‑1 (MQ=60)
                                                                   CAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATCCAGAACACCGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTCTAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCAAAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATAAGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATC                                                                                                                                                                                                     >  SRR13385772.1114505/1‑301 (MQ=60)
                                                                    AATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCG                                                                                                                                                                                                    >  SRR13385772.1223926/1‑301 (MQ=60)
                                                                        GTTTGGTTCCTGTATGTTGTTTATTTTGGTCAAATGGCAAAATACAGAACACAGGTATATCTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTAGGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCTTTCAGTGTTATTCTGACGATGGGTCTCTCGTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGAGCTGGACTGAGCAGACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGT                                                                                                                                                                                                <  SRR13385772.1291423/301‑1 (MQ=60)
                                                                          TTGGTTCCTGTATTTTGGTTATTGTGTTCTAATGTCAAAATACAGAACACATGTATAACTTTCTTTGTCGTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACAGTAACGAACTCTCGACCTAGAGTAGCCTCCTGGCGTTCGTTCAGTGTTATGCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTGACGCTAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTA                                                                                                                                                                                               <  SRR13385772.401127/300‑1 (MQ=60)
                                                                                                            GCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTA                                                                                                                                                             >  SRR13385772.505422/1‑300 (MQ=60)
                                                                                                                                     TTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCC                                                                                                                                   >  SRR13385772.480124/1‑301 (MQ=60)
                                                                                                                                        CTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGCATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAACAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGG                                                                                                                                 >  SRR13385772.1260883/1‑300 (MQ=60)
                                                                                                                                          TTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATT                                                                                                                              >  SRR13385772.1022405/1‑301 (MQ=60)
                                                                                                                                                  TTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGCAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATC                                                                                                                      >  SRR13385772.119800/1‑301 (MQ=60)
                                                                                                                                                   TCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATC                                                                                                                      <  SRR13385772.1273805/300‑1 (MQ=60)
                                                                                                                                                                                    TACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACGAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAAGTGCGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGA                                                                                                                                                                                      <  SRR13385772.745231/203‑1 (MQ=60)
                                                                                                                                                                                       ATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCAT                                                                                 <  SRR13385772.1260133/301‑1 (MQ=60)
                                                                                                                                                                                                 TCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGACTACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCCTATAAGTATGTGAAGCGTCCATTGGCTGACTT                                                                       >  SRR13385772.828110/1‑301 (MQ=60)
                                                                                                                                                                                                   TCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTT                                                                      <  SRR13385772.1303708/300‑1 (MQ=60)
                                                                                                                                                                                                             GTAGGCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTC                                                                                                                             <  SRR13385772.199289/235‑1 (MQ=60)
                                                                                                                                                                                                                                               CGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGTAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTT                         >  SRR13385772.1069944/1‑301 (MQ=60)
                                                                                                                                                                                                                                                GATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGTGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTT                        >  SRR13385772.273559/1‑301 (MQ=60)
                                                                                                                                                                                                                                                GATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTT                        <  SRR13385772.668351/301‑1 (MQ=60)
                                                                                                                                                                                                                                                     GTCTCGCTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCC                   <  SRR13385772.460770/301‑1 (MQ=60)
                                                                                                                                                                                                                                                        TCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGATGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTT                >  SRR13385772.557961/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                       TTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTTTCATGATAGATATC  >  SRR13385772.99046/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                
TATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAAGCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTTTCATGATAGATATC  >  BK006934/354398‑354960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑