Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCCTTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACT  >  BK006934/355442‑355984
                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                         
CATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACT                                                                                                                                                                                                                                                     >  SRR13385772.641380/1‑300 (MQ=60)
         TGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGAT                                                                                                                                                                                                                                            >  SRR13385772.281431/1‑300 (MQ=60)
                              GACAGGTATATACTGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAGCAGCACTTCTTCGGCCAACTATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTC                                                                                                                                                                                                                      <  SRR13385772.24936/301‑1 (MQ=60)
                                                                         TTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTC                                                                                                                                                                            <  SRR13385772.519229/300‑1 (MQ=60)
                                                                                TTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAAT                                                                                                                                                                    >  SRR13385772.196731/1‑301 (MQ=60)
                                                                                                                   CTAGATATTGTTTTTTCCATAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTG                                                                                                                                                                                                                                                                                           <  SRR13385772.523667/147‑1 (MQ=60)
                                                                                                                      GATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCTAGAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTGAGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTGTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGGTTGCCATTTAACTAAGCAGAGCTTTCCCATGT                                                                                                                              <  SRR13385772.780059/301‑1 (MQ=60)
                                                                                                                                      TAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCT                                                                                                                                                                                                                                                                                    >  SRR13385772.165135/1‑135 (MQ=60)
                                                                                                                                            TTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCC                                                                                                        >  SRR13385772.276469/1‑301 (MQ=60)
                                                                                                                                                                         GCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCAAGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATAT                                                                           <  SRR13385772.280648/301‑1 (MQ=60)
                                                                                                                                                                                GAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGAAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTCTTATGCAAGCATCGCTTTACTAGTGTGGATACAAAAAAGCTTTATTACACTCTCTTTCATCCTTTCAGTTGGTTTAACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGAAGAGCTTTACCATGTTCAATGCACACATGTTACTTCATTTGTGCCAGATAGTATTGTACAAAATATGTATATC                                                                    >  SRR13385772.1241880/1‑301 (MQ=60)
                                                                                                                                                                                         ATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGG                                                           <  SRR13385772.674832/301‑1 (MQ=60)
                                                                                                                                                                                                 TATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCAGCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCTGCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAG                                                    <  SRR13385772.959403/300‑1 (MQ=60)
                                                                                                                                                                                                    AGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTA                                                <  SRR13385772.1235978/301‑1 (MQ=60)
                                                                                                                                                                                                            CACTTCTTCGGCCAACAATATCACGAACATTGAGCAAGATAGTGCTATAAAAGGACAGTTGCCCTTTTTTCCCTATTATGCAAGCATCGCTATACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCACCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGCAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCACATGTTCAATGCACCCATGTTAATTCCCTTGTCCCAGATAGAATTGTACAAAATCTGACTATCCCTTTCGGGCACTGAGTCTAATAAAATC                                        >  SRR13385772.77910/1‑301 (MQ=60)
                                                                                                                                                                                                               TTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTGTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTAGTGTACAAAATATGTCTATCCCTTTGGGTAATGGAGTCTAATAAAATCGTC                                     >  SRR13385772.212072/1‑301 (MQ=60)
                                                                                                                                                                                                                           CAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCT                         <  SRR13385772.166239/301‑1 (MQ=60)
                                                                                                                                                                                                                             ATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTTGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTG                       >  SRR13385772.816116/1‑301 (MQ=60)
                                                                                                                                                                                                                             ATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTACTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCACTTTGGGGAATTGAGTCTAATCAAATCGTCTTTGCCCTATCTTG                       >  SRR13385772.846326/1‑301 (MQ=60)
                                                                                                                                                                                                                                   cgatAATTGAGCAAGATAGTGCTATAAATGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGG                 <  SRR13385772.1062513/297‑1 (MQ=60)
                                                                                                                                                                                                                                                  ATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACT  <  SRR13385772.48335/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                         
CATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCCTTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACT  >  BK006934/355442‑355984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑