Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATGAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCCTATTACTGTATATGTGACTTTACATTGTTACTTCCGCGGCTATTTGACGTTTTCTGCTTCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCGCCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTATAATTGCCCTCCATTTTGTGTCACCTATTTAAGCAAAAAATTGAAAG  >  BK006934/355946‑356508
                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                    
CGTCTTGGCCCGATCTTGGCTTGGATTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATTACATTATCCATGAATTTACTGAGTACCTGTACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTATGTATCTACTTGTTTTTATTCGAAAACAAGGCACAACAATCAAACTATCGCCCTGTGAGATTTTCAATCTAAAGTTTGTTTAATAGATAGCGGTATATTATGGAACTATAAAGGTCCTTGAAGATACATAGTGTTTCATTCTTATTACTGTATATG                                                                                                                                                                                                                                                                        <  SRR13385772.1158879/301‑1 (MQ=60)
                             GTCTCTCACTAGGTGTTCACATTATGTTTATGACTGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGATACTTCCGCGGCTAT                                                                                                                                                                                                                                           >  SRR13385772.524439/1‑301 (MQ=60)
                                 CTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTG                                                                                                                                                                                                                                        >  SRR13385772.19435/1‑300 (MQ=60)
                                   CACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTG                                                                                                                                                                                                                                        <  SRR13385772.1190584/298‑1 (MQ=60)
                                            TTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCT                                                                                                                                                                                                                            >  SRR13385772.454393/1‑301 (MQ=60)
                                                                  CATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAA                                                                                                                                                                                                      <  SRR13385772.182867/301‑1 (MQ=60)
                                                                                               ACGTTTATGCTTTATCCATCAAGCGCTCGAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTAGTCGAAAGCAAGGCACAACGATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGA                                                                                                                                                                         <  SRR13385772.732756/301‑1 (MQ=60)
                                                                                                       TCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCTCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCTCTGGGAGATGTTCAATCTCAAGTTTGTGTAATAGAGAGCGTTATATTATGGAACTATAAAGGTCCTTGAATATACATATTGTTTCAGTCTTATTACTGTATATGTGACTTGACAGTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCATGGGCGGCTTGGAGGGCAAAGTGTCAGAATAGCGGCCAGGCCGTATGACACAAAA                                                                                                                                                                  <  SRR13385772.1215591/300‑1 (MQ=60)
                                                                                                        CTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGATTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACAAAAA                                                                                                                                                                   >  SRR13385772.700741/1‑298 (MQ=60)
                                                                                                             TCCATCAAGCGCTCCAAGCTGACATAAATCTCACTTTGTATCTACTTTTTTTTATTCTAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTTTGTAATAGTTAGCGTTATATTATAGAACTATAAAGTTCCTTGAATATACATAGTGTTTCTTTCTTATTACTGTATATGTGACTTTATATTGCTACTTCCTCGGCTATTTGACGTTTTTTGCTCCATGTTCGGCTTGGAGTGCAATGTTTCAGAAAATCGGCCACGCCGTATGATACAAAAGAGT                                                                                                                                                              >  SRR13385772.949091/1‑298 (MQ=60)
                                                                                                               CATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAA                                                                                                                                                         <  SRR13385772.97893/301‑1 (MQ=60)
                                                                                                                     GCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTGATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCGTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGA                                                                                                                                                   <  SRR13385772.411478/301‑1 (MQ=60)
                                                                                                                           CAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATACGAAAACAAGGCACAACTGTCAATCTGTCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGACAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAA                                                                                                                                             <  SRR13385772.391797/301‑1 (MQ=60)
                                                                                                                                 GACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATC                                                                                                                                        <  SRR13385772.515011/300‑1 (MQ=60)
                                                                                                                                 GACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTC                                                                                                                                               >  SRR13385772.445870/1‑293 (MQ=60)
                                                                                                                                             ACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTAGCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTGATATTATAGAACGATAAATGTTCTTGAATATACATAGTGTTTCATTCTTATTACTGGATATGTGACTTTACATGGCTACGTCCGCGTCGATTTGACGTTTTTTGCGCCAGTTGCTGCTTTGAGTGCAAAGTGTCAGAAAAGCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCC                                                                                                                           <  SRR13385772.1249970/301‑1 (MQ=60)
                                                                                                                                                     TCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAG                                                                                                                                                               <  SRR13385772.350735/257‑1 (MQ=60)
                                                                                                                                                                     CGACAACAAGGCACAACAATCAATCTATCACCCTGTTAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTAGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCT                                                                                                    <  SRR13385772.596195/300‑1 (MQ=60)
                                                                                                                                                                                    ACAAGCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTGGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAAC                                                                                    <  SRR13385772.1257618/301‑1 (MQ=60)
                                                                                                                                                                                               ATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGACTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTT                                                                           <  SRR13385772.574752/299‑1 (MQ=60)
                                                                                                                                                                                                   CCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTT                                                                     <  SRR13385772.1195211/301‑1 (MQ=60)
                                                                                                                                                                                                    CCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATATAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTC                                                                    >  SRR13385772.85870/1‑301 (MQ=60)
                                                                                                                                                                                                       GTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGA                                                                  >  SRR13385772.166898/1‑300 (MQ=60)
                                                                                                                                                                                                                       CAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTT                                                 >  SRR13385772.1203256/1‑301 (MQ=60)
                                                                                                                                                                                                                         AGTGTGTGTAATAGATAGCGTTATATTATAGATCTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCGCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTATA                                               <  SRR13385772.367765/301‑1 (MQ=60)
                                                                                                                                                                                                                          GTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTATAA                                              <  SRR13385772.771575/301‑1 (MQ=60)
                                                                                                                                                                                                                                      GATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTATAATTGCCCTCCATT                                  <  SRR13385772.430490/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                       TGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTATAATTGCCCTCCATTTTGTGTCACCTATTTAAGCAAAAAATTGAAAG  <  SRR13385772.1246530/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                            ATACCTAGTGTTTCATTCTTATTACTGTATATGTGACTTCACATTGCTACTTCCGCGGCTATTGGACGTTTTTTGCTCCAGGTGCTGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAAATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCCCCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGACAAGCCAAGG                                                        <  SRR13385772.12659/241‑1 (MQ=60)
                                                                                                                                                                                                                                                                                 TAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGC                                                                                                                                                                                                                    >  SRR13385772.1194175/1‑80 (MQ=60)
                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                    
CGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATGAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCCTATTACTGTATATGTGACTTTACATTGTTACTTCCGCGGCTATTTGACGTTTTCTGCTTCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCGCCCAGCTCTCTGACAAAGCTCCAGAACGGTTGTCTTTTGTTTCGAAAAGCCAAGGTCCCTTATAATTGCCCTCCATTTTGTGTCACCTATTTAAGCAAAAAATTGAAAG  >  BK006934/355946‑356508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑