Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATATTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAACTCTCCCTTTCAAATATTTCTTTCTCTATACTACCTAACTCAGCAGAAAATTTTCACTTGGAAACTGCAC  >  BK006934/357643‑358235
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                    
GCCGTTAAATGAAAGTTGCATAAATGCAAGAACTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTAT                                                                                                                                                                                                                                                                                                      <  SRR13385772.1054735/301‑1 (MQ=60)
     TAAATGACAGTTGCATAAATGCAAGACCTTCGCAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAA                                                                                                                                                                                                                                                                                                  <  SRR13385772.252317/300‑1 (MQ=60)
     TAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCA                                                                                                                                                                                                                                                                                                   >  SRR13385772.634973/1‑299 (MQ=60)
                      AATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATA                                                                                                                                                                                                                                                                                <  SRR13385772.509934/301‑1 (MQ=60)
                            AGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGGTCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGC                                                                                                                                                                                                                                                                          <  SRR13385772.1140387/301‑1 (MQ=60)
                              atacgagctcgtttcacgtgactggagttcagcgtgtgctcttccgatctCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAA                                                                                                                                                                                                                                                                        <  SRR13385772.579563/251‑1 (MQ=60)
                                   CGAAAAGGCGATCAAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATACGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCG                                                                                                                                                                                                                                                                    >  SRR13385772.862468/1‑300 (MQ=60)
                                     AAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAAGCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGCATGGAAGGGCGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAAC                                                                                                                                                                                                                                                                 >  SRR13385772.102840/1‑301 (MQ=60)
                                            GATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACC                                                                                                                                                                                                                                                          >  SRR13385772.724616/1‑301 (MQ=60)
                                                                            GGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTACTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCA                                                                                                                                                                                                                          <  SRR13385772.627110/301‑1 (MQ=60)
                                                                                      CCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGGTCTTCATGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTGCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAATCAAATCGAACGGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTC                                                                                                                                                                                                                <  SRR13385772.988978/301‑1 (MQ=60)
                                                                                            CTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGCCTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAACGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGACGCACATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTT                                                                                                                                                                                                                            >  SRR13385772.1212412/1‑283 (MQ=60)
                                                                                                     CTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAA                                                                                                                                                                                                  >  SRR13385772.520439/1‑300 (MQ=60)
                                                                                                       CGTCAATCCACACCAATGGGAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAA                                                                                                                                                                                                   <  SRR13385772.388115/297‑1 (MQ=60)
                                                                                                                 CACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGATCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATT                                                                                                                                                                                     <  SRR13385772.242288/301‑1 (MQ=60)
                                                                                                                            GCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAA                                                                                                                                                                          <  SRR13385772.528267/301‑1 (MQ=60)
                                                                                                                                  AAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATG                                                                                                                                                                    <  SRR13385772.330632/301‑1 (MQ=60)
                                                                                                                                        AATGAGGATACGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCCCTGAAATATCCGAGTTCATCTTCAAGCGGTATGCAAGGGTGTTTAGAAAAGGAGGACTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTAAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATA                                                                                                                                                               >  SRR13385772.227270/1‑300 (MQ=60)
                                                                                                                                             GGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGACACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTAT                                                                                                                                                                     >  SRR13385772.15869/1‑289 (MQ=60)
                                                                                                                                                         CAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATC                                                                                                                                              <  SRR13385772.904415/300‑1 (MQ=60)
                                                                                                                                                                                                 AACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCT                                                                                                                            <  SRR13385772.850863/278‑1 (MQ=60)
                                                                                                                                                                                                                            TGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACG                                                                          >  SRR13385772.464910/1‑301 (MQ=60)
                                                                                                                                                                                                                               CCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAACCCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAAC                                                                       >  SRR13385772.629806/1‑301 (MQ=60)
                                                                                                                                                                                                                                                ATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGtaaacaaactcccccttccaaaactt                                                      >  SRR13385772.102194/1‑275 (MQ=60)
                                                                                                                                                                                                                                                                      GGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAACTCCCCTTTCCAAATATTTCTTTtcctatccacccaattt                                >  SRR13385772.999930/1‑284 (MQ=60)
                                                                                                                                                                                                                                                                          TGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAACTCTCCCTTTCAAATATTTCTTTCTCTATACTACCTAATTCAGC                            >  SRR13385772.607199/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                 GTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGCATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAACTCTCCCTTTCACATATTTCTTTCTCTATACTACCTAATTCAGCAGAAAAT                     >  SRR13385772.680841/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                    TTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAACTCTCCCTTTCAAATATTTCTTTCTCTATACTACCTAATTCAGCAGAAAATTTTCACTTGGAAACTGCAC  >  SRR13385772.1198168/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                    
GCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATATTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCTAAGACCAGAGATAGGCTCACGTTCTGAATGCAAAACAAGCTATGGTAACGAACTCTCCCTTTCAAATATTTCTTTCTCTATACTACCTAACTCAGCAGAAAATTTTCACTTGGAAACTGCAC  >  BK006934/357643‑358235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑