Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	6054	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAAAATGGATGCAGAAAATGCAGATAGGGTATATTCGAAAGGGGTCAAGTTGATTGCAAGCGGTACTCTACCATCTGGTATATTTAATAGGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCCCTTCATATCTACATAGAATAGGTTAAGTATTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGAGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAGTATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAAT  >  BK006934/358313‑358871

AAAAAAATGGATGCAGAAAATGCAGATAGGGTATATTCGAAAGGGGTCAAGTTGATTGCAAGCGGTACTCTACCATCTGGTATATTTAATAGGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCT                                                                                                                                                                                                                                                                    <  SRR13385772.199839/301‑1 (MQ=60)

                                                AAGTTGATTGCAAGCGGTACTCTACCATCTGGTATATTTAATATGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTGAAATCGTTAAAAAAATATTCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATAT                                                                                                                                                                                                                     <  SRR13385772.897282/300‑1 (MQ=60)

                                                     GATTGCAAGCGGTACTCTACCATCTGGTATATTTAATAGGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGATCTCCCAACTGAGCTACATCCGCTTAATATTTGTTATCCGTTCTCTTCATATCTACCTCGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTG                                                                                                                                                                                                               >  SRR13385772.528223/1‑301 (MQ=60)

                                                      ATTGCAAGCGGTACTCTACCATCTGGTATATTGAATAGGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAGCACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGA                                                                                                                                                                                                              <  SRR13385772.828589/301‑1 (MQ=60)

                                                               GGTACTCTACCATCTGGTATATTTAATCGGGAAGCATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGCATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGA                                                                                                                                                                                                       >  SRR13385772.1054578/1‑299 (MQ=60)

                                                                                   ATTTAATAGGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGAT                                                                                                                                                                                  <  SRR13385772.241936/300‑1 (MQ=60)

                                                                                                                            AGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGT                                                                                                                                        <  SRR13385772.1199404/301‑1 (MQ=60)

                                                                                                                                 TAAATAAACTAATGATGTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCATATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATATAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTTGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATAC                                                                                                                                    <  SRR13385772.922048/300‑1 (MQ=60)

                                                                                                                                    ATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGA                                                                                                                                 >  SRR13385772.1157788/1‑300 (MQ=60)

                                                                                                                                      AAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATA                                                                                                                              <  SRR13385772.142563/301‑1 (MQ=60)

                                                                                                                                              GATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGGACATAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAGCTGAGCTAGATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTCCATAGGATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAGTAATGAAGATTGGGTGGATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTGTACAGAATATACTAGAA                                                                                                                      <  SRR13385772.1040356/301‑1 (MQ=60)

                                                                                                                                               ATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACAACGGACCTCCAGATAACTTGAACGAAGTTTTTTCTTCAGTCTGGCGATCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAAAGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAG                                                                                                                     <  SRR13385772.245454/301‑1 (MQ=60)

                                                                                                                                                                                   ATCGAACACAGGACCACCAGATAAATTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAAT                                                                                 <  SRR13385772.506724/301‑1 (MQ=60)

                                                                                                                                                                                            AGGACCTCCAGATAACTTGACCGAAGGTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGGTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTC                                                                        <  SRR13385772.955545/301‑1 (MQ=60)

                                                                                                                                                                                              GACCTCCAGATAACTTGACCTAAGTTGTTTCGTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTGATCAGGTCTCTTCATATCTACATATAATAGCTTAAGTGTTTTAGTAGTTGCCAGAAGAACTACTGATAGTTTGGAATATTTGGTGAATAATGAAGATTGGGTTAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGTAGATCTTGAAGGTCACAAAAGTGAATCTATATTTCTA                                                                      <  SRR13385772.1019110/301‑1 (MQ=60)

                                                                                                                                                                                               ACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTAC                                                                     <  SRR13385772.716697/301‑1 (MQ=60)

                                                                                                                                                                                                   CCAGATACCTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTCTTTGTTATCAGTTCTCTTAATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATA                                                                  <  SRR13385772.287952/300‑1 (MQ=60)

                                                                                                                                                                                                             TGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTAGTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCGCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCAT                                                        <  SRR13385772.987901/300‑1 (MQ=60)

                                                                                                                                                                                                                              TCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTT                                       <  SRR13385772.330605/300‑1 (MQ=60)

                                                                                                                                                                                                                              TCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTT                                       <  SRR13385772.273798/300‑1 (MQ=60)

                                                                                                                                                                                                                                             CCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCAT                        <  SRR13385772.636003/300‑1 (MQ=60)

                                                                                                                                                                                                                                                 ACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTG                   <  SRR13385772.374351/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                   ACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTttgataattgcatt  >  SRR13385772.919823/1‑286 (MQ=60)

                                                                                                                                                                                                                                                                              TCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTA                                                                                                                                                   <  SRR13385772.692029/144‑1 (MQ=60)

CAAAAAATGGATGCAGAAAATGCAGATAGGGTATATTCGAAAGGGGTCAAGTTGATTGCAAGCGGTACTCTACCATCTGGTATATTTAATAGGGAAGAATTGTTTGAGGAAGATAGTTTCTATAAGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCCCTTCATATCTACATAGAATAGGTTAAGTATTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGAGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAGTATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAAT  >  BK006934/358313‑358871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`