Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGTATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACGTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCGTCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACGTAAAGATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAACGCAAGGACTAGTAGTGTAATAGAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGAC  >  BK006934/358897‑359434
                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  
AATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGC                                                                                                                                                                                                                                               <  SRR13385772.265193/301‑1 (MQ=60)
                        ATGAATAGTTATCACAGCAACGTTCAATGATCTTCAATTCGGCTTCAGTACTGCATTAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGGCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTGGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTATTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAATGACTAGTAGTGT                                                                                                                                                                                                                        <  SRR13385772.374864/300‑1 (MQ=60)
                        ATGAATAATTATCACAGCAACGTTCAATTATCGTCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGT                                                                                                                                                                                                                          <  SRR13385772.480676/298‑1 (MQ=60)
                                                CAATTATCTTCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGT                                                                                                                                                                                                <  SRR13385772.613609/300‑1 (MQ=60)
                                                         TCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTATATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCC                                                                                                                                                                                      >  SRR13385772.980767/1‑301 (MQ=60)
                                                               CGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTG                                                                                                                                                                                <  SRR13385772.27039/301‑1 (MQ=60)
                                                                   TTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAAT                                                                                                                                                                            >  SRR13385772.1297776/1‑301 (MQ=60)
                                                                   TTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATA                                                                                                                                                                                                                                                                                  <  SRR13385772.732182/199‑1 (MQ=60)
                                                                     CAGTACTGCATGAAATACTCGCTAACATTGTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATT                                                                                                                                                                           <  SRR13385772.1266047/300‑1 (MQ=60)
                                                                                  AATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTAATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATCTTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCG                                                                                                                                                               >  SRR13385772.125142/1‑299 (MQ=60)
                                                                                            AACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTAGAGGGTGGCTT                                                                                                                                                     <  SRR13385772.676676/299‑1 (MQ=60)
                                                                                                   TCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTTGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATA                                                                                                                                             <  SRR13385772.735497/300‑1 (MQ=60)
                                                                                                       TATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAACGTATCGATACCCTTTTTGGAATTATTGTATCTTCACGGGTGGCTTTTAATATATTTTT                                                                                                                                        >  SRR13385772.938640/1‑301 (MQ=60)
                                                                                                                 AAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAA                                                                                                                              <  SRR13385772.207451/301‑1 (MQ=60)
                                                                                                                    CACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTT                                                                                                                                                                                  <  SRR13385772.1055762/246‑1 (MQ=60)
                                                                                                                          GACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAAC                                                                                                                     >  SRR13385772.491115/1‑301 (MQ=60)
                                                                                                                              CTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTT                                                                                                                 >  SRR13385772.546316/1‑301 (MQ=60)
                                                                                                                                              GGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCC                                                                                                 >  SRR13385772.323536/1‑301 (MQ=60)
                                                                                                                                               GCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTAACAACAACGAAATCAC                                                                                                >  SRR13385772.623607/1‑301 (MQ=60)
                                                                                                                                                                    ATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTCGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGCTGTGTAATAATTTT                                                                            >  SRR13385772.200187/1‑300 (MQ=60)
                                                                                                                                                                                                AGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATC                                               >  SRR13385772.171422/1‑301 (MQ=60)
                                                                                                                                                                                                 GGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCC                                              <  SRR13385772.215301/301‑1 (MQ=60)
                                                                                                                                                                                                  GAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCT                                             <  SRR13385772.233936/301‑1 (MQ=60)
                                                                                                                                                                                                                                             TATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTCTTGCTTTACCAATCCTTTTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGAC  >  SRR13385772.992670/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  
AATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGTATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACGTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCGTCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACGTAAAGATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAACGCAAGGACTAGTAGTGTAATAGAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGAC  >  BK006934/358897‑359434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑