Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGGACTAGTAGTGTAATAGAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACAT  >  BK006934/359206‑359790
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                           
AAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATCTGATAATATACTGGTGGTGACTGACAGCAAAATCTTTCTGGAAAACT                                                                                                                                                                                                                                                                                              >  SRR13385772.898422/1‑301 (MQ=60)
                 TATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC                                                                                                                                                                                                                                                                              >  SRR13385772.307581/1‑300 (MQ=60)
                   TAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAACAA                                                                                                                                                                                                                                                                            >  SRR13385772.697923/1‑300 (MQ=60)
                                          GATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATATTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTG                                                                                                                                                                                                                                                   >  SRR13385772.400229/1‑301 (MQ=60)
                                             ACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATCGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTT                                                                                                                                                                                                                                                 <  SRR13385772.543239/300‑1 (MQ=60)
                                                    TTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGT                                                                                                                                                                                                                                                            <  SRR13385772.301143/282‑1 (MQ=60)
                                                      GGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCAT                                                                                                                                                                                                                                       <  SRR13385772.1173846/301‑1 (MQ=60)
                                                                 ATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACAT                                                                                                                                                                                                                            >  SRR13385772.339037/1‑301 (MQ=60)
                                                                    TTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGCCAGCAAAATCTTTCTGGCAAACATCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGCGTTATGTTTTCATGAATATGACATCTG                                                                                                                                                                                                                         >  SRR13385772.905422/1‑301 (MQ=60)
                                                                                            TTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAA                                                                                                                                                                                                  <  SRR13385772.1005303/300‑1 (MQ=60)
                                                                                                        ATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTATCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTT                                                                                                                                                                                     >  SRR13385772.1114919/1‑301 (MQ=60)
                                                                                                               AACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTT                                                                                                                                                                               <  SRR13385772.450569/300‑1 (MQ=60)
                                                                                                                         AACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTA                                                                                                                                                                    <  SRR13385772.284018/301‑1 (MQ=60)
                                                                                                                              CGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATG                                                                                                                                                                                                                                >  SRR13385772.177400/1‑236 (MQ=60)
                                                                                                                                      CAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATT                                                                                                                                                       <  SRR13385772.1231081/301‑1 (MQ=60)
                                                                                                                                                     AATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTTGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTTGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAA                                                                                                                                         >  SRR13385772.493044/1‑300 (MQ=60)
                                                                                                                                                                     TACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTA                                                                                                                         <  SRR13385772.5251/300‑1 (MQ=60)
                                                                                                                                                                                TACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTACTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATT                                                                                                              <  SRR13385772.27088/300‑1 (MQ=60)
                                                                                                                                                                                                        CATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATA                                                                                      <  SRR13385772.775672/300‑1 (MQ=60)
                                                                                                                                                                                                        CATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTAT                                                                                       <  SRR13385772.1165053/299‑1 (MQ=60)
                                                                                                                                                                                                                         ACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTATGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCT                                                                     >  SRR13385772.503149/1‑300 (MQ=60)
                                                                                                                                                                                                                               CACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTTAATGTCAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTC                                                                 <  SRR13385772.457380/298‑1 (MQ=60)
                                                                                                                                                                                                                                 CGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTT                                                                                                                                                          >  SRR13385772.105066/1‑207 (MQ=60)
                                                                                                                                                                                                                                                   TATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCATTGTTATGTTGTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTGTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAAGAGCGCTGCTACTCCAACTATATAACCCATGTTCT                                            <  SRR13385772.806389/299‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           AAATCTTTCTGTAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACAT  <  SRR13385772.545/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                             ATCTTTCTGGAAAACGTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTT                                                                                                                                                          <  SRR13385772.1121313/147‑1 (MQ=60)
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                           
AAGGACTAGTAGTGTAATAGAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACAT  >  BK006934/359206‑359790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑