Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGA  >  BK006934/374804‑375393
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                        
ATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGA                                                                                                                                                                                                                                                                                                   <  SRR13385772.108449/301‑1 (MQ=60)
            AGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAAT                                                                                                                                                                                                                                                                                       <  SRR13385772.1248223/301‑1 (MQ=60)
                                    CTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACAATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCAAATTTGCCCCTGGCTCTCTGTAAATACCAATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCAAAGTAATAGATATAGGCACGTGGCTGAAGTG                                                                                                                                                                                                                                                               >  SRR13385772.899148/1‑301 (MQ=60)
                                                     GAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGT                                                                                                                                                                                                                                              >  SRR13385772.237038/1‑301 (MQ=60)
                                                               ACTAGCAGGATTGGGCCGCCTGCACGCTTTTAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGG                                                                                                                                                                                                                                    <  SRR13385772.760084/301‑1 (MQ=60)
                                                                    CAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAAGAGAGAAGCGATCTCCGCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTGTAAGGTGTTTGTGTTGTCCGTGTGAAACTGCTGTTTCCATGTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCAGATATGAACGGTATATATATTGTATATTAATGGCGGATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGAT                                                                                                                                                                                                                               <  SRR13385772.771563/301‑1 (MQ=60)
                                                                                      CCTCTTTGCGCCTCAAGAGAGGAGCTATCTCCTCGGAGAGTTTTCTTCCCTGATGCTGGTTACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGTAACTGCTGTTTCCATTGTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATG                                                                                                                                                                                                             <  SRR13385772.547914/301‑1 (MQ=60)
                                                                                                                  CTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGACCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAAC                                                                                                                                                                                 >  SRR13385772.753868/1‑301 (MQ=60)
                                                                                                                       CGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCAAGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTC                                                                                                                                                                             >  SRR13385772.994140/1‑300 (MQ=60)
                                                                                                                         GAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTACTAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAA                                                                                                                                                                           >  SRR13385772.997890/1‑300 (MQ=60)
                                                                                                                                                                         TGGCCTTTTGAAACTGCTGTTTCCATTTTGCCGCGTGTAGACATCTTTCCAATTTGCCCCTGGCTTTCTGTAAATACCCATATATTAACGTTATATATATTGTATATTAATGTCGTATATGTGCGCATGTGAAGTCACAGTAATAGATCTAGGCACGTGTCTGCAGTGACTCCGCTCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACTGTATGTTACAACAGTCAAATTAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCC                                                                                                                           <  SRR13385772.994019/300‑1 (MQ=60)
                                                                                                                                                                                                        CGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTG                                                                                           <  SRR13385772.421757/301‑1 (MQ=60)
                                                                                                                                                                                                                 ACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTA                                                                                  <  SRR13385772.197287/301‑1 (MQ=60)
                                                                                                                                                                                                                                GCCGCTGGCTCTCTGTAAATACCCGTATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAATGTAGATAAGAGAGCGGAGCACATGGTAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATT                                                                   <  SRR13385772.1207036/301‑1 (MQ=60)
                                                                                                                                                                                                                                     TGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGCACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGT                                                              >  SRR13385772.132393/1‑301 (MQ=60)
                                                                                                                                                                                                                                         TCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATAT                                                          >  SRR13385772.902930/1‑301 (MQ=60)
                                                                                                                                                                                                                                                AAATACCCATATATGAACGTTATATATATTGTATATTACTGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGCTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTT                                                   >  SRR13385772.1144253/1‑301 (MQ=60)
                                                                                                                                                                                                                                                       CATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGTCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGT                                            >  SRR13385772.425660/1‑301 (MQ=60)
                                                                                                                                                                                                                                                       CATATATGAACGTTATAGATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGG                                            >  SRR13385772.173869/1‑301 (MQ=60)
                                                                                                                                                                                                                                                             TGAACGTTATATATATTGTATATTAATTGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCTGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGA                                       <  SRR13385772.740654/300‑1 (MQ=60)
                                                                                                                                                                                                                                                              GAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTAC                                              >  SRR13385772.160479/1‑292 (MQ=60)
                                                                                                                                                                                                                                                                  GTTTTATATATTGTGTATTAATTGCGTATATGTGCGCAGGGGAAGTCACAGTAAGAGATCTAGGCACGTGGCTGCATTGACTCCGCGCATTGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCTCCCACGTGCTTACATCATTTACTATCTCAGGCCGCTTCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTTCCATGCATTTATGTATATATATTTTCGGACGTAATGAACATGG                                 <  SRR13385772.440090/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                            TTTTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACTGTATGTTACAACAGTCAAAGTAATGAACGTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGTCGTTGTATTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTAT                        <  SRR13385772.510247/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                             TGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATAT                      >  SRR13385772.1254883/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                  TGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTAGTAATTGCTATAAGTGCCATGAATTTATGTAAATATATTATCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGA  >  SRR13385772.493370/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                        
ATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGA  >  BK006934/374804‑375393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑