Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATA  >  BK006934/375013‑375608
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                          
ACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTA                                                                                                                                                                                                                                                                                                           <  SRR13385772.197287/301‑1 (MQ=60)
               GCCGCTGGCTCTCTGTAAATACCCGTATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAATGTAGATAAGAGAGCGGAGCACATGGTAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATT                                                                                                                                                                                                                                                                                            <  SRR13385772.1207036/301‑1 (MQ=60)
                    TGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGCACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGT                                                                                                                                                                                                                                                                                       >  SRR13385772.132393/1‑301 (MQ=60)
                        TCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATAT                                                                                                                                                                                                                                                                                   >  SRR13385772.902930/1‑301 (MQ=60)
                               AAATACCCATATATGAACGTTATATATATTGTATATTACTGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGCTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTT                                                                                                                                                                                                                                                                            >  SRR13385772.1144253/1‑301 (MQ=60)
                                      CATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGTCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGT                                                                                                                                                                                                                                                                     >  SRR13385772.425660/1‑301 (MQ=60)
                                      CATATATGAACGTTATAGATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGG                                                                                                                                                                                                                                                                     >  SRR13385772.173869/1‑301 (MQ=60)
                                            TGAACGTTATATATATTGTATATTAATTGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCTGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGA                                                                                                                                                                                                                                                                <  SRR13385772.740654/300‑1 (MQ=60)
                                             GAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTAC                                                                                                                                                                                                                                                                       >  SRR13385772.160479/1‑292 (MQ=60)
                                                 GTTTTATATATTGTGTATTAATTGCGTATATGTGCGCAGGGGAAGTCACAGTAAGAGATCTAGGCACGTGGCTGCATTGACTCCGCGCATTGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCTCCCACGTGCTTACATCATTTACTATCTCAGGCCGCTTCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTTCCATGCATTTATGTATATATATTTTCGGACGTAATGAACATGG                                                                                                                                                                                                                                                          <  SRR13385772.440090/301‑1 (MQ=60)
                                                           TTTTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACTGTATGTTACAACAGTCAAAGTAATGAACGTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGTCGTTGTATTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTAT                                                                                                                                                                                                                                                 <  SRR13385772.510247/300‑1 (MQ=60)
                                                            TGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATAT                                                                                                                                                                                                                                               >  SRR13385772.1254883/1‑301 (MQ=60)
                                                                                 TGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTAGTAATTGCTATAAGTGCCATGAATTTATGTAAATATATTATCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGA                                                                                                                                                                                                                           >  SRR13385772.493370/1‑300 (MQ=60)
                                                                                                  AGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGATGAG‑AAAA                                                                                                                                                                                                         >  SRR13385772.504437/1‑300 (MQ=60)
                                                                                                   GTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAA                                                                                                                                                                                                       <  SRR13385772.224259/301‑1 (MQ=60)
                                                                                                          gtctaggctgttggctggagtggctgcggGCAGGGCTGTACCGCGAAGGTAGGTAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAGGTAATGAAGTTGCGCGCACGTGCTGACATCAGTTACTATCTCAGGGCGCTGGGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTTCCAGGGATTGATGTATATATATTTTCTTACGGAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAag                                                                                                                                                                                                <  SRR13385772.857212/272‑3 (MQ=60)
                                                                                                              AGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑GA                                                                                                                                                                                               <  SRR13385772.427661/297‑1 (MQ=60)
                                                                                                                             GGGACGCCGCGCAGGGCTGTACCTCCAAGGTGGATAAGAGAGCGGAGCACATGGGAAAATAGATATACGGTATGTTACAACAGTCAAAGTAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCTTTGTAGTTGTAATTGCGATAAGGGCCATGCATTTATGTATATATGTTTTCTTACGTAATGAACATTGTGATTTTATATATTGTTTGCAATCAGAGAGAAGTGGAAGAGGAGAAAAAAAAAAAA‑GAGAGAGCCGTACCGCAATA                                                                                                                                                                             <  SRR13385772.775830/301‑1 (MQ=60)
                                                                                                                                             GTGTACCGCCAAGGTAGATGAGAGAGCGTAGGACATGGGAAAAGGGAGAGACGGTATGTTACATCAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACAACAATTGCTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTGGTTGTAATTACTATAAGTGCCATGCATTTATGTATATATAATGTAGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGGGAGAAGTTGAAGAGGGGAAAAAAAAAAAA‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCG                                                                                                                                                             <  SRR13385772.45694/301‑1 (MQ=60)
                                                                                                                                                                                           AGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTTTCGGTCACGTGAGCAAAAATACTATTGCCGCCGCCGGCCGTAGATAATA                                                                                                               >  SRR13385772.528202/1‑300 (MQ=60)
                                                                                                                                                                                            GATACGGTATGTTACACAAGTCAAAGGAATGAACTTTCGCCCACGTGGGTACATCATTTACTATTTCAGGGCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAAAAAAAAAAA‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAA                                                                                                              <  SRR13385772.444755/301‑1 (MQ=60)
                                                                                                                                                                                             ATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAACGAGAGAGCCGTACCGCAATAAAATGGACCCCTGTCGGccacgcgagcgatcagaagagaacacccaggcacgcacgtcacaca                                                                                                              >  SRR13385772.1145645/1‑254 (MQ=60)
                                                                                                                                                                                               ACGTTATTTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCTTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGATAGAAGTTGAAGAGGAGAAAAAAAAAAAA‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAA                                                                                                           <  SRR13385772.268376/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                 TTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAaaagaaaacccgaccccaaaaaaaaagaacccgtgccggcccctgagtaaaaaaaaaaaacaccccaacatacctaaaaaaaaaaaaaaagagtaaacagaatcaccaacacctcaaatcccctactgtgaaaactactctgtcgccatcctctactctccaaaataatatagtatgtctgcttc         >  SRR13385772.127242/1‑116 (MQ=60)
                                                                                                                                                                                                                                                                                                        TGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAAAAAAAAAAA‑GAGCGAGCCGTAACGCAATACAATGGAACCTTGTCGGTAACGTGAGCAAAAATACTATTACCGCCCACGGCCTTAGATAATCACAAAGGAATAAAACAAAAAgagcgaatactcgagttaccttttccgatgctttccgcaagataaatcaacaaacaaacacaccactgacctataaaaccattaacacc  >  SRR13385772.1244556/1‑212 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                          
ACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATA  >  BK006934/375013‑375608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑