Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTTAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCGACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCC  >  BK006934/375716‑376258
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
CTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGC                                                                                                                                                                                                                                                    >  SRR13385772.418769/1‑301 (MQ=60)
                                        GAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAA                                                                                                                                                                                                            <  SRR13385772.59064/301‑1 (MQ=60)
                                                  CCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGT                                                                                                                                                                                                  <  SRR13385772.751357/301‑1 (MQ=60)
                                                            CCAGAAGAGTAGAAAATAGATCTCTGAAAAGCGTTTGGGATGCTTCTGATATCTCAGATGACTTCATTGAGCTAGCTGGTGTAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAAT                                                                                                                                                                                           <  SRR13385772.118292/298‑1 (MQ=60)
                                                                               ATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTT                                                                                                                                                                                                                         >  SRR13385772.1302482/1‑249 (MQ=60)
                                                                                TCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCACAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAACTATCAAAAGTTACTTTTAATGATAACCAAAAATGGCCTGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGACAGATTTCGTGTCCAGAATTAATCGCCCAGCCTTTTACGATG                                                                                                                                                                    >  SRR13385772.956357/1‑301 (MQ=60)
                                                                                         AGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGT                                                                                                                                                           <  SRR13385772.319310/301‑1 (MQ=60)
                                                                                                       TTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTC                                                                                                                                             >  SRR13385772.66030/1‑301 (MQ=60)
                                                                                                                   gggTGACGTCATTGGGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTCATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGC                                                                                                                                 <  SRR13385772.248510/298‑1 (MQ=60)
                                                                                                                            CATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAAC                                                                                                                        <  SRR13385772.537334/301‑1 (MQ=60)
                                                                                                                                GAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAG                                                                                                                                                                                                           <  SRR13385772.745966/214‑1 (MQ=60)
                                                                                                                                          GTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAA                                                                                                          <  SRR13385772.752757/301‑1 (MQ=60)
                                                                                                                                                       CGAGAGATTGTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCGTTGAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGTGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAAGCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAGCA                                                                                             <  SRR13385772.1220668/301‑1 (MQ=60)
                                                                                                                                                                    CCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGTGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAAT                                                                                <  SRR13385772.938249/301‑1 (MQ=60)
                                                                                                                                                                                                                  ATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCAATGCGATGATTGAAGAGTTTACTTTAACACCGGCTATGTC                                  >  SRR13385772.36584/1‑301 (MQ=60)
                                                                                                                                                                                                                            ATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGG                          >  SRR13385772.119641/1‑299 (MQ=60)
                                                                                                                                                                                                                            ATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTAT                                     <  SRR13385772.981395/288‑1 (MQ=60)
                                                                                                                                                                                                                                 ATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTAC                   >  SRR13385772.705289/1‑301 (MQ=60)
                                                                                                                                                                                                                                   GATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGTATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACA                  <  SRR13385772.128964/300‑1 (MQ=60)
                                                                                                                                                                                                                                       CGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGC             >  SRR13385772.754157/1‑301 (MQ=60)
                                                                                                                                                                                                                                              CACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTC      >  SRR13385772.98473/1‑301 (MQ=60)
                                                                                                                                                                                                                                                  GCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCGCTCTGACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTGTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCC  <  SRR13385772.1062300/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
CTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTTAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCGACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCC  >  BK006934/375716‑376258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑