Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTTAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCGACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACGCAGTTGCTCGATAATTGGTCAACTGGACCATACAAAGACTTAAACAAGCCAAGGGTCCTATATACCATTGCAACGGGCCAAAATCCTACCGGGATGTCTGTCCCCCAGTGGAAAAGAGAGAAAATTTACCAGTTGGCCCAAAGACACGATTTCCTCAT  >  BK006934/375926‑376478
                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                        
ATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCAATGCGATGATTGAAGAGTTTACTTTAACACCGGCTATGTC                                                                                                                                                                                                                                                              >  SRR13385772.36584/1‑301 (MQ=60)
          ATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGG                                                                                                                                                                                                                                                      >  SRR13385772.119641/1‑299 (MQ=60)
          ATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTAT                                                                                                                                                                                                                                                                 <  SRR13385772.981395/288‑1 (MQ=60)
               ATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTAC                                                                                                                                                                                                                                               >  SRR13385772.705289/1‑301 (MQ=60)
                 GATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGTATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACA                                                                                                                                                                                                                                              <  SRR13385772.128964/300‑1 (MQ=60)
                     CGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGC                                                                                                                                                                                                                                         >  SRR13385772.754157/1‑301 (MQ=60)
                            CACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTC                                                                                                                                                                                                                                  >  SRR13385772.98473/1‑301 (MQ=60)
                                GCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCGCTCTGACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTGTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCC                                                                                                                                                                                                                              <  SRR13385772.1062300/301‑1 (MQ=60)
                                                                                         GCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATTTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATC                                                                                                                                                                     <  SRR13385772.1282864/301‑1 (MQ=60)
                                                                                                        TTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCATCCTTTTCCGATTAGACGGAGTCTAACGGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTC                                                                                                                                                       <  SRR13385772.340600/300‑1 (MQ=60)
                                                                                                                      ACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATGTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACT                                                                                                                                        <  SRR13385772.1280079/301‑1 (MQ=60)
                                                                                                                       CATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGgggatgactttt                                                                                                                                                                  >  SRR13385772.62843/1‑262 (MQ=60)
                                                                                                                                 AAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACTGGACCATACA                                                                                                                              >  SRR13385772.345511/1‑300 (MQ=60)
                                                                                                                                        TGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACTGGACCATACAAAGACTT                                                                                                                       <  SRR13385772.194547/300‑1 (MQ=60)
                                                                                                                                                GAATGAATCGCCCGGCCTTGTCGGATGGGACTGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACTATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTGACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGGTGCTCGATAATTGGTCAACTGGACCATACATAGACTTAAACAAG                                                                                                                <  SRR13385772.635121/299‑1 (MQ=60)
                                                                                                                                                 AATTAATCGCCCAGCCTGTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACTGGAC                                                                                                                                    <  SRR13385772.55992/278‑1 (MQ=60)
                                                                                                                                                                                                       TTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACTGGACCATACAAAGACTTAAACAAGCCAAGGGTCCTATATACCATTGCAACGGGCCAAAATCCTACCGGGATGTCTGTCCC                                                        <  SRR13385772.429316/300‑1 (MQ=60)
                                                                                                                                                                                                                                        TTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGACTCTCTAACCCAGTTGCTCGATAATTGGTCAACTGGACCATACAACGACTTAAACAAGACAACGGTCCTATATACCATTGCAACGGGCCAAAATCCTACCGGGATGTCTGACCCCAAGTGGAAACGAGCGAAACTTTACCAGTTGGCC                      >  SRR13385772.704063/1‑301 (MQ=60)
                                                                                                                                                                                                                                                            AATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACGTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACTGGACCATACAAAGACTTAAACAAGCCAAGGGTCCTATATACCATTGCAACGGGCCAAAATCCTACCGGGATGTCTGTCCCCCAGTGGAAAAGAGAGAAAATTTACCAGTTGGCCCAAAGACACGATTTCCTCAT  <  SRR13385772.1128093/301‑1 (MQ=60)
                                                                                                                                                                                                                                                            AATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACCCAGTTGCTCGATAATTGGTCAACTGGACCATACAAAGCCTTAAACAAGCCAAGGGTCCTATATACCATTGCAACGGGCCCAAATCCTACCGGGCTGTCTGTCCCCCAGTGGAACAGATAGAAAATTTACCAGTTGGCCCAAAGACACGCTTTCCTCAT  >  SRR13385772.629025/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                        
ATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTTAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCGACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACAGGAGCAAAAGTCATCCCCATCAAGATGAACCTGACCTTCGACAGAGAGTCCCAGGGTATTGATGTCGAATATCTAACGCAGTTGCTCGATAATTGGTCAACTGGACCATACAAAGACTTAAACAAGCCAAGGGTCCTATATACCATTGCAACGGGCCAAAATCCTACCGGGATGTCTGTCCCCCAGTGGAAAAGAGAGAAAATTTACCAGTTGGCCCAAAGACACGATTTCCTCAT  >  BK006934/375926‑376478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑