Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTGGGGATACAAATTCTATAAGAGGTTCCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGTCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTACCTCCAAGTTTAAGTAAAGCAGGCCATAAACAGTTTCTAACCATTATATCTATTATTGCAACAATCATTAATAACGCGGTTAACATTTCTAATTATTATATCCAAAGAAACAATAAGATGAATCTAGAAACCAAGAAAA  >  BK006934/380229‑380812
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                            
TTTGGAGATACAACTTCTATAAGAGGTTCCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAG                                                                                                                                                                                                                                                                                              <  SRR13385772.246478/300‑1 (MQ=60)
          CAAATTCTATAAGAGGTTCCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCCTGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATCAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCT                                                                                                                                                                                                                                                                                   >  SRR13385772.1148047/1‑301 (MQ=60)
            AATTCTATAAGAGGTTCCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCG                                                                                                                                                                                                                                                                                 >  SRR13385772.973987/1‑301 (MQ=60)
            AATTCTATAAGAGGTTCCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCG                                                                                                                                                                                                                                                                                 >  SRR13385772.586950/1‑301 (MQ=60)
                            CCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAA                                                                                                                                                                                                                                                                 <  SRR13385772.766000/301‑1 (MQ=60)
                              TGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAAT                                                                                                                                                                                                                                                                >  SRR13385772.1217038/1‑300 (MQ=60)
                                                           AACTCATGCAGAAGTTACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATTATCGCTCTCTTTTCCTTTTCATACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTAAGTGATTATCTCTACACTAGCCTTGCTGTAGTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGT                                                                                                                                                                                                                                  <  SRR13385772.899867/301‑1 (MQ=60)
                                                                  GCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTGTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAAC                                                                                                                                                                                                                            <  SRR13385772.1006239/300‑1 (MQ=60)
                                                                             ATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTT                                                                                                                                                                                                                <  SRR13385772.255555/301‑1 (MQ=60)
                                                                                 AATCCTTTGTTTAAGCGACAATTAAAAATACTGATCGCTCTCTTTTCCTTTTCAGACTTGCTAATTCAATTTCACACCATCCGCGGATTCGAGAAGTCTGCGCTTCGCCTTTCATGCCACGATCTCCGATACGCCTCTCAGTCCCTTTTTTCTCGCATTCTCTACGTCACTTTCTCTATGTCAGTGCTTCTCTCTCCACTCGCCTTGCTGTATTCTTCGCAACTTTTTCTCGTCTTTTAACACCCTACTCCACGGCGCATCCATGCTGTCTTGTCTGGTACCAACCCGTTTTACTTTGACC                                                                                                                                                                                                            >  SRR13385772.1180127/1‑301 (MQ=60)
                                                                                             AAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGCTGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCG                                                                                                                                                                                                >  SRR13385772.277931/1‑301 (MQ=60)
                                                                                                            ATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGC                                                                                                                                                                                 >  SRR13385772.1281310/1‑301 (MQ=60)
                                                                                                                          CTTTTCCTTTTCAGACTTGCTCATTAAATTTGCCAAGATCCGCGGATTAGAGAAGTTTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCTAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGT                                                                                                                                                                   >  SRR13385772.982165/1‑301 (MQ=60)
                                                                                                                          CTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGT                                                                                                                                                                   >  SRR13385772.490838/1‑301 (MQ=60)
                                                                                                                               CCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTTTGCGCTTCGCATTTAATTAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGTGCACTTGTGGGTTGGTTAGGG                                                                                                                                                              >  SRR13385772.54822/1‑301 (MQ=60)
                                                                                                                               CCTTTTCAGACTTGCTCATTAAATTTGAAAAGATCAGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGG                                                                                                                                                              <  SRR13385772.763014/301‑1 (MQ=60)
                                                                                                                                   TTCAGACTTGCTCATTAAATTTGACAAGATCCGCTGATTAGAGAAGGCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATTTAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCA                                                                                                                                                           <  SRR13385772.162342/300‑1 (MQ=60)
                                                                                                                                                  TAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTGTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTGCC                                                                                                                                           >  SRR13385772.1045326/1‑301 (MQ=60)
                                                                                                                                                                                     GGCTTCGCATTTAATGAAAAGATCTCCGATAATTATATAAGTCCCTTTTTTCACGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACTCGTTTTAATTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACTTCTGTAGTCTTGCCTCCAAGTTTGAGTAAAGCAGGCCATAAACAGTTTC                                                                                                        <  SRR13385772.319347/301‑1 (MQ=60)
                                                                                                                                                                                     CGCTTCGCATTTAATGAAAAGATCGCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCGACACTAGCCTTGCTGTATTCTTAGCAAATTTGTCTCGTATTTTAAAACCATAAGACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGAGGGTTTGTTAGGGCCACATCTGTA                                                                                                                                                   <  SRR13385772.333178/258‑1 (MQ=60)
                                                                                                                                                                                                                   AAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTGCCTCCAAGTTTGAGTAAAGCAGGCCATAAACAGTTTCTAACCATTATATCTATTATTGCAACAATCA                                                                          <  SRR13385772.518922/301‑1 (MQ=60)
                                                                                                                                                                                                                    AGTATATAAGTCCCTTTGTTCTCGAATTATATAAGGCACTTTCTATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTGTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGTTACCAACACGTTGTACTGTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTGCCTCCAAGTTTGAGTAAAGCAGGCCATAAACAGTTTCTAACCAGTATATCTATTATTGCAACAATCAT                                                                         <  SRR13385772.1181032/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                ATATGTCAGTGATTATCTCTACACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTGCCTCCAAGTTTGAGTAAAGCAGGCCATAAACAGTTTCTAACCATTATATCTATTATTGCAACAATCATTAATAACGCGGTTAACATTTCTAATTATTATATCCAAAGAA                                <  SRR13385772.14098/298‑1 (MQ=60)
                                                                                                                                                                                                                                                                                      ACTAGCCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTCAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTGCCTCCAAGTTTGAGTAAAGCAGGCCATAAACAGTTTCTCACCATTATATCTATTATTGCAACAATCATTCATAACGCGGTTAACATTTCTAATTATTATATCCAAAGAAACACTAAGATGAATCTAGAAACCA        >  SRR13385772.899324/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                           CCTTGCTGTATTCGTAGCAAATTTTTCTCGTATTGTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGTTTTGTTAGGGCCACATCTGTAGTCTTGCCTCCAAGTTTGAGTAAAGCAGGCCATAAACAGTTTCTAACCATGATATCTATTATTGCAACAATCATTAATAACGCGGTTAACATTTCTAATTATTATATCCAAAGAAACAATAAGATGAATCTAGAAACCAAGAAAA  <  SRR13385772.1080924/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                            
TTTGGGGATACAAATTCTATAAGAGGTTCCTGTTTGCAGCATCTAAAAACAGAGCGTGAAACGCATGCAGAAGTGACATATAATCCTTTGTTTAAGCGACAATTAAAAATAATGATCGCTCTCTTTTCCTTTTCAGACTTGCTCATTAAATTTGACAAGATCCGCGGATTAGAGAAGTCTGCGCTTCGCATTTAATGAAAAGATCTCCGATAAGTATATAAGTCCCTTTTTTCTCGAATTATATAAGTCACTTTCTATATGTCAGTGATTATCTCTACACTAGTCTTGCTGTATTCTTAGCAAATTTTTCTCGTATTTTAAAACCATAATACAAGGAGAATCCATGATGTCTTGTCTGGTACCAACACGTTTTACTTTGACCCTTAACACCGCGTGTCTTTTGACGAGCACCTGGGGGTTTGTTAGGGCCACATCTGTAGTCTTACCTCCAAGTTTAAGTAAAGCAGGCCATAAACAGTTTCTAACCATTATATCTATTATTGCAACAATCATTAATAACGCGGTTAACATTTCTAATTATTATATCCAAAGAAACAATAAGATGAATCTAGAAACCAAGAAAA  >  BK006934/380229‑380812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑