Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑C‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATA  >  BK006934/382336‑382874
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                          
AGCATTATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAATTAATTTGACTGCACAGGTAATTAGTTGTATCTTTTTTCTGTAATGGTGAAACGGCTAAATTCACAAATATCTAATTAGTATTACTAATGATATCCTCAATATAGTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTATCTAGCTCAAAAGTAGAATGAAGTTTAATAACTAGTAAATTCTTGCTTGACATGGATTTGCCTTACTATT                                                                                                                                                                                                                                                     <  SRR13385772.700773/300‑1 (MQ=60)
 GCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAACAAAGTCATTTGACTGCTCATGTAATTAGCAGTATCTTTTTTCTGTAATGGGGTGACGGCTACTTTTACACATATCTAATGTGTTTAACTAATGATATCCTCAATATATTTTCTAACGAGAGTTCTTATTATAAGGGCCAATAAATGTATCCTTCAGGTGTTCAGTACTTTGAGAACAGATGAATATATTTCGCTAGCTCATCAGTAGAATGAAGTTTACTAACTATTAAATTCTTGCTTGACATGGAATTGCCTTACGATTC                                                                                                                                                                                                                                                    >  SRR13385772.761577/1‑300 (MQ=60)
                  TAGTAATTGATCTTAAAAAAA‑AAAGTAATTGGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTGGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGTCATGGATTTGCCGTACGATTCAGGATATTTTAAAAttt                                                                                                                                                                                                                                   <  SRR13385772.1285396/300‑4 (MQ=60)
                               A‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGT                                                                                                                                                                                                                   <  SRR13385772.913690/300‑1 (MQ=60)
                                                      GCACATGTAATTAGTTGTATCTTTTTTAACTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACAC                                                                                                                                                                                             >  SRR13385772.994842/1‑301 (MQ=60)
                                                                TTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCC                                                                                                                                                                                   >  SRR13385772.441284/1‑301 (MQ=60)
                                                                            TTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAGAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATA                                                                                                                                                                        <  SRR13385772.570854/300‑1 (MQ=60)
                                                                            TTTGTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAG                                                                                                                                                                           <  SRR13385772.795379/297‑1 (MQ=60)
                                                                                                                              ACGAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACGTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGATTTAAGTTTAATAACTATTGAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCGCACGCCCTAATGGAGATAAATAACATGTTTTTTCTATTCC‑CTAATCGGCCACATACCCATTATTACTG                                                                                                                     <  SRR13385772.1022342/300‑1 (MQ=60)
                                                                                                                                              ATATATTTTCTAACCAGAGTTCTTATTATAATGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAA                                                                                                    <  SRR13385772.1051535/301‑1 (MQ=60)
                                                                                                                                                         AACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATCTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTC                                                                                                                                                                                                                                                    >  SRR13385772.884881/1‑149 (MQ=60)
                                                                                                                                                                       TTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCA                                                                                                                                      >  SRR13385772.384234/1‑242 (MQ=60)
                                                                                                                                                                                     AAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATA                                                              <  SRR13385772.542820/300‑1 (MQ=60)
                                                                                                                                                                                          TATCCTTCAGGAGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGCTATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGCTAAATACCATGGATTGTCTATT‑CACTCATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATT                                                        >  SRR13385772.1277088/1‑301 (MQ=60)
                                                                                                                                                                                                           GTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTGTAATAACGATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATAGTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGGTTGTCTATTCC‑CTAATCGTCCACAGACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAA                                       <  SRR13385772.522478/301‑1 (MQ=60)
                                                                                                                                                                                                                           TGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTCCTAATTACACTCTCACGCCCTACTGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGACACTCCCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCT                       >  SRR13385772.157800/1‑301 (MQ=60)
                                                                                                                                                                                                                           TGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCT                       >  SRR13385772.895086/1‑301 (MQ=60)
                                                                                                                                                                                                                                          AGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTAAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCG         <  SRR13385772.756609/300‑1 (MQ=60)
                                                                                                                                                                                                                                                AAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATA  <  SRR13385772.992165/301‑1 (MQ=60)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                          
AGCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑C‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATA  >  BK006934/382336‑382874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑