Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑CCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTTTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTTA‑TTTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAAT  >  BK006934/382607‑383177
                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                            
TGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATCTACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCC                                                                                                                                                                                                                                                                                >  SRR13385772.669975/1‑301 (MQ=60)
                                   attttaaaatttcTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACT                                                                                                                                                                                                                                                >  SRR13385772.945388/14‑300 (MQ=60)
                                      ttaaaatttcTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAA                                                                                                                                                                                                                                             <  SRR13385772.169690/290‑1 (MQ=60)
                                                                           AATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAG                                                                                                                                                                                                         >  SRR13385772.1037542/1‑299 (MQ=60)
                                                                             TTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTA                                                                                                                                                                                                                                               <  SRR13385772.260115/259‑1 (MQ=60)
                                                                               ACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCG                                                                                                                                                                                                   <  SRR13385772.226143/301‑1 (MQ=60)
                                                                                                          TAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCATTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAAAGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTT                                                                                                                                                                        >  SRR13385772.195496/1‑301 (MQ=60)
                                                                                                                   TTGTCTATTCCCTAATCGTCCACCTACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCGTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGAT                                                                                                                                                                <  SRR13385772.970380/300‑1 (MQ=60)
                                                                                                                          TC‑CCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCGGAACATACGCACTGTTGGTACGATGCAGCGGC                                                                                                                                                        <  SRR13385772.969256/300‑1 (MQ=60)
                                                                                                                                                  TATTACGGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAGTTCTACCTCTCTTGGTGGAAGGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGC                                                                                                                                 <  SRR13385772.312640/300‑1 (MQ=60)
                                                                                                                                                                     GCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCA                                                                                                                >  SRR13385772.133195/1‑298 (MQ=60)
                                                                                                                                                                                TTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATAAATTGTAAAAAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTATTGGTGGAAAGCCTTCCCTCACCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGACCGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGAAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCACT                                                                                                  >  SRR13385772.1085713/1‑301 (MQ=60)
                                                                                                                                                                                  caagcTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCGCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACGAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATG                                                                                                 <  SRR13385772.371717/295‑1 (MQ=60)
                                                                                                                                                                                                  AGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTAGCTCTCTTGGTGGAAAGCCTTCCCTCGCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTA‑TTTTtca                                                                               <  SRR13385772.828043/301‑4 (MQ=60)
                                                                                                                                                                                                                                           TATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGTGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATTTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTT                                       >  SRR13385772.638160/1‑301 (MQ=60)
                                                                                                                                                                                                                                                           AGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCATTGTCAGGATTTATTTTTCATTATGTATGGGTGTCTCGGATGTTCGGATGTCTCTGTCTTTTATTTTGAAGTTTGTG                       >  SRR13385772.448655/1‑301 (MQ=60)
                                                                                                                                                                                                                                                               CATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATTTTTCATGATGTATGGGTGTCTCGGCTGTTCGGATGTCATTGTCTTTTATTTTGAAGTTTGTGACA                    >  SRR13385772.1020429/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                ATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATTTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAA                  <  SRR13385772.64492/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                  TTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATTTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAA                   >  SRR13385772.391060/1‑298 (MQ=60)
                                                                                                                                                                                                                                                                         AATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATTTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTAT         >  SRR13385772.304598/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                CTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGCTGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATTTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAAT  >  SRR13385772.630837/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                            
TGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑CCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTTTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTTA‑TTTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAAT  >  BK006934/382607‑383177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑