Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	6054	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTTTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTT‑A‑T‑TTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAATAATA‑‑TGTAGCAACATAGCCAACTAATTGCCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAAGTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCAT  >  BK006934/382800‑383386

AGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTAGCTCTCTTGGTGGAAAGCCTTCCCTCGCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑A‑T‑TTTtca                                                                                                                                                                                                                                                                                                  <  SRR13385772.828043/301‑4 (MQ=60)

                                         TATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGTGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTT                                                                                                                                                                                                                                                          >  SRR13385772.638160/1‑301 (MQ=60)

                                                         AGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCATTGTCAGGATTT‑ATT‑TTTCATTATGTATGGGTGTCTCGGATGTTCGGATGTCTCTGTCTTTTATTTTGAAGTTTGTG                                                                                                                                                                                                                                          >  SRR13385772.448655/1‑301 (MQ=60)

                                                             CATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGCTGTTCGGATGTCATTGTCTTTTATTTTGAAGTTTGTGACA                                                                                                                                                                                                                                       >  SRR13385772.1020429/1‑300 (MQ=60)

                                                              ATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAA                                                                                                                                                                                                                                     <  SRR13385772.64492/301‑1 (MQ=60)

                                                                TTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAA                                                                                                                                                                                                                                      >  SRR13385772.391060/1‑298 (MQ=60)

                                                                       AATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTAT                                                                                                                                                                                                                            >  SRR13385772.304598/1‑301 (MQ=60)

                                                                              CTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGCTGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAAT                                                                                                                                                                                                                     >  SRR13385772.630837/1‑301 (MQ=60)

                                                                                ACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAAT                                                                                                                                                                                                                     <  SRR13385772.500496/299‑1 (MQ=60)

                                                                                  CTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGCAACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTTTGGAAAATAATT                                                                                                                                                                                                                 >  SRR13385772.1094865/1‑301 (MQ=60)

                                                                                   TCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAACATAATA‑‑T                                                                                                                                                                                                              >  SRR13385772.1003499/1‑301 (MQ=60)

                                                                                        TGGTGGAAAGCCTTCCCCCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAACCCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATA‑‑TGTG                                                                                                                                                                                                           <  SRR13385772.382294/299‑1 (MQ=60)

                                                                                                      CCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTTTTGGTACGATGCAGCGTCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCTAGACTTCTACCAATGTCATGATTT‑ATT‑TTTCATGAGTTATGGGTGTTTCTGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAA                                                                                                                                                                                              >  SRR13385772.314700/1‑300 (MQ=60)

                                                                                                           CGCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCTTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCA                                                                                                                                                                                                        <  SRR13385772.475384/285‑1 (MQ=60)

                                                                                                                             ATACCGTCGACCAACTCAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTATGCACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACCGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTT                                                                                                                                                                      <  SRR13385772.263075/301‑1 (MQ=60)

                                                                                                                                         gggggggggggggggggggggggggggggggggggcgcgggagggggcggggcgccggctgagcatacgcgcgggTGGTACGGTGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATAGTGTTTTGTATCAAGACTTCTACCAATGTCAGGATTTCT‑T‑TTTCATGACGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTCTTTTGCCGTTTGTGACAAAGAATGCTATGGCAACTAATATGTGTAGCAACATAACCAATTAATTATCCTTGCATTACATTTTGGCCGTACTATT                                                                                                                                                          >  SRR13385772.90668/76‑301 (MQ=60)

                                                                                                                                         AACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATT                                                                                                                                                          >  SRR13385772.90686/1‑301 (MQ=60)

                                                                                                                                           CTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGCTGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTT                                                                                                                                                         >  SRR13385772.197390/1‑300 (MQ=60)

                                                                                                                                                      GCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGT                                                                                                                                             >  SRR13385772.487172/1‑301 (MQ=60)

                                                                                                                                                             CGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCCGTACTATTTACAATGCCATGTTTTATGT                                                                                                                                      >  SRR13385772.230780/1‑301 (MQ=60)

                                                                                                                                                                                            TCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCTGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGT                                                                                                       >  SRR13385772.444493/1‑301 (MQ=60)

                                                                                                                                                                                                     GAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCC                                                                                                <  SRR13385772.1005386/299‑1 (MQ=60)

                                                                                                                                                                                                      AACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTGACAGTAGTTTATTGACATTCTTCTGTTGTTGCCCGCT                                                                                             >  SRR13385772.247823/1‑301 (MQ=60)

                                                                                                                                                                                                           ACGCACTGGTGGTACGATGCAGCGGCGGTCGGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCGACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCT                                                                                        <  SRR13385772.1258953/301‑1 (MQ=60)

                                                                                                                                                                                                               CCTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCT                                                                                    <  SRR13385772.852437/301‑1 (MQ=60)

                                                                                                                                                                                                                     GGTACGATGCAGCGGCGGTCTGACTGCTTGTGTGACAGGTATATTTGTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑A‑TGTGTCATGATGTATGGGTGTCTCGGATGTTCGTATGTCACTGTCTTTTATGTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACAGAACCAATTAATTATCATGGCATTAAATTGTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTAGTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAA                                                                               <  SRR13385772.1212270/300‑1 (MQ=60)

                                                                                                                                                                                                                             GCCGCGGCGGTCTGACTGCATTTTTTACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAAT                                                                      <  SRR13385772.62339/301‑1 (MQ=60)

                                                                                                                                                                                                                                GCGGCTGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATT                                                                   <  SRR13385772.787621/301‑1 (MQ=60)

                                                                                                                                                                                                                                           actGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTC                                                        >  SRR13385772.1105420/4‑301 (MQ=60)

                                                                                                                                                                                                                                               CATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACA                                                     >  SRR13385772.788077/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                   TTTTGTATCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGA                                 <  SRR13385772.1123672/300‑1 (MQ=60)

                                                                                                                                                                                                                                                                          TCAAGACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACT                                                                                                                                                             >  SRR13385772.499474/1‑169 (MQ=60)

                                                                                                                                                                                                                                                                               ACTTCTACCAATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAACTTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTGTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGAATCCATTTTGGTAT                    >  SRR13385772.1076368/1‑301 (MQ=60)

                                                                                                                                                                                                                                                                                         ATGTCAGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGC           >  SRR13385772.1004764/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                                              AGGATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTTGCAGTACTATTTAAAATGTCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAATTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTT     >  SRR13385772.203368/1‑301 (MQ=60)

                                                                                                                                                                                                                                                                                                 ATTT‑ATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATAATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCAT  <  SRR13385772.1040294/301‑1 (MQ=60)

AGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTTTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTT‑A‑T‑TTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAATAATA‑‑TGTAGCAACATAGCCAACTAATTGCCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAAGTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCAT  >  BK006934/382800‑383386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`