Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACAATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCTGAATATCTCTACTTTTTCCAACTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGTTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGG  >  BK006934/383548‑384142
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                       
GTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAAT                                                                                                                                                                                                                                                                                                         <  SRR13385772.246623/300‑1 (MQ=60)
  GATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAA                                                                                                                                                                                                                                                                                                      <  SRR13385772.1038943/301‑1 (MQ=60)
       TGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAGCCCATCTGATACTTTCGAACTCGACTATTATACATGAATTTGATCCTTTAAAGGTGAAGGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGGCATCTTTGATGGCGGGAACGCATTCATAAATAGTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATT                                                                                                                                                                                                                                                                                                  <  SRR13385772.524737/300‑1 (MQ=60)
                   CTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAAT                                                                                                                                                                                                                                                                                                         >  SRR13385772.731781/1‑281 (MQ=60)
                                         TGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTATCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTGTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGT                                                                                                                                                                                                                                                                <  SRR13385772.535078/300‑1 (MQ=60)
                                              gggaagaaaggctcaaacccagagcataaggtcgacCTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTT                                                                                                                                                                                                                                                          >  SRR13385772.374170/37‑301 (MQ=60)
                                              GGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTA                                                                                                                                                                                                                                                          <  SRR13385772.464825/301‑1 (MQ=60)
                                                    AAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCC                                                                                                                                                                                                                                                    >  SRR13385772.273073/1‑301 (MQ=60)
                                                                             TCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCTTGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATGACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCGCCCCCCGGCTCTGGGTCATATCCATAC                                                                                                                                                                                                                            <  SRR13385772.185906/300‑1 (MQ=60)
                                                                                                             TTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACCTTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCACACGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGC                                                                                                                                                                                            >  SRR13385772.1143996/1‑300 (MQ=60)
                                                                                                                 AATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATCCTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCT                                                                                                                                                                                       >  SRR13385772.1251364/1‑301 (MQ=60)
                                                                                                                 AATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCT                                                                                                                                                                                       >  SRR13385772.803515/1‑301 (MQ=60)
                                                                                                                            CGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTT                                                                                                                                                                             <  SRR13385772.429230/300‑1 (MQ=60)
                                                                                                                                     GCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATC                                                                                                                                                                   <  SRR13385772.618003/301‑1 (MQ=60)
                                                                                                                                             GTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTT                                                                                                                                                            <  SRR13385772.1266118/300‑1 (MQ=60)
                                                                                                                                                  GCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGACGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTT                                                                                                                                                      <  SRR13385772.86884/301‑1 (MQ=60)
                                                                                                                                                         CGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTTGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTT                                                                                                                                               <  SRR13385772.745656/301‑1 (MQ=60)
                                                                                                                                                             TGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATG                                                                                                                                            <  SRR13385772.1010611/300‑1 (MQ=60)
                                                                                                                                                                TCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCACTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTCTTGATCATCGGGTTTTTAGGTTTCAACTTATCGGA                                                                                                                                         >  SRR13385772.1095108/1‑300 (MQ=60)
                                                                                                                                                                             GTCTTCTTTGATGTCGTGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGTCAGGTCCGAATATCCCTACTTTTTCCAATTAACATGGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCT                                                                                                                                                                                                                                             >  SRR13385772.253252/1‑187 (MQ=60)
                                                                                                                                                                                         GTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATTCTGT                                                                                                               >  SRR13385772.1164498/1‑301 (MQ=60)
                                                                                                                                                                                          TCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTT                                                                                                              >  SRR13385772.610862/1‑301 (MQ=60)
                                                                                                                                                                                                         TAAATATTGGTGCTCTAGGTGTCATTTTAATCATCCTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTACGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATCATATTTACCTTGGTGGTCGCCTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTCTACCCATAGGACTGGCGGGTGCCTGCTGCTGGGCATTATTGATAATCGGGCTTTTAGGTTTCAATTTCTGGGTAGATGGGCCTACAACGTCCATGCTGTTGGTCCGTGGACCGTC                                                                                               >  SRR13385772.256889/1‑301 (MQ=60)
                                                                                                                                                                                                          AAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCC                                                                                              >  SRR13385772.1194235/1‑301 (MQ=60)
                                                                                                                                                                                                                                   TTAATCATACTTTATAACATAAGACAGAATTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTT                                                                      <  SRR13385772.990084/300‑1 (MQ=60)
                                                                                                                                                                                                                                        CATACTTTATAACATAAGACAGAAGTATACTGGTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGGAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAGTAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGC                                                                 <  SRR13385772.1171171/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                  ATAGTGCTGTTGGCAGGTCCGAATTTCTCTTCTGTTTCCGATTAACATTGCGATGGATAGTATTTAAGTTGGTGGTGGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCGTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGGCTACGAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGA                                       <  SRR13385772.936635/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                           TTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTAGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTGTTAGGTTGCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTAATAGCTATTTTTTTAGTCTCTCTTTTAAACTTCAAAGCATGGATCACCGACC                              >  SRR13385772.685637/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                            CTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACT                                                                                                                               <  SRR13385772.30073/186‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                      TCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCCTGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGG  >  SRR13385772.1276301/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                       
GTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACAATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCTGAATATCTCTACTTTTTCCAACTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGCTATACAAATAGGACTGGCGGGTGCATGTTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGG  >  BK006934/383548‑384142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑