Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAG  >  BK006939/337558‑338118
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                     
TTTTTTTATTTAGTTATAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCACTTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCCCCCCCTTCCATTTATCCGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCCTTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAACATTCGATATATTACCATGACTAAAGGGCTATGG                                                                                                                                                                                                                                                                     >  SRR13385772.903219/1‑301 (MQ=60)
   TTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTC                                                                                                                                                                                                                                                                   <  SRR13385772.28675/300‑1 (MQ=60)
        TTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCACATTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGT                                                                                                                                                                                                                                                             >  SRR13385772.955468/1‑301 (MQ=60)
                              GAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGTATTGGCTGGTTGTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCTTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACATGGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAATTTTCGATGTATTAACATGACTAAAGGGCTAGGGTCCGTCGTAGCAGAAGGCAATCATCACTTT                                                                                                                                                                                                                                       >  SRR13385772.229393/1‑301 (MQ=60)
                                        TACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATACTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGG                                                                                                                                                                                                                             >  SRR13385772.638327/1‑301 (MQ=60)
                                           TTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTTTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTTACTCATTACGATTTTTCACTCATCTATGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCTGAAGGCAATCATCACTTTAAAACCTAGGCC                                                                                                                                                                                                                           >  SRR13385772.757654/1‑300 (MQ=60)
                                             AGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACA                                                                                                                                                                                                                        <  SRR13385772.898348/301‑1 (MQ=60)
                                                              TTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTG                                                                                                                                                                                                       >  SRR13385772.562139/1‑301 (MQ=60)
                                                                            GTCAGCATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTACATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGCAGTCGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTAACCTCCTCGAAGTATTGTTAAATTTCGATATATTAACATGAATAAAGGGCTATGGTCCGTCGTCGCAGAAGGACATCATCACTTTAAAACCGAGGCCACAATCGATACTTAGACATGATATCCTGATTGG                                                                                                                                                                                          >  SRR13385772.1020403/1‑300 (MQ=60)
                                                                                 AATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAA                                                                                                                                                                                     >  SRR13385772.534068/1‑300 (MQ=60)
                                                                                                GTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑‑TTTTTTTTTCGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGCTAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGC                                                                                                                                                                    >  SRR13385772.741536/1‑301 (MQ=60)
                                                                                                 TTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCACTCGTTGAAGTAGATTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGACACAATCGATAATTAGCACTGATATTCTGATTGGACAAAAGGCAAAACATGACCGC                                                                                                                                                                    >  SRR13385772.812778/1‑301 (MQ=60)
                                                                                                    TCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAA                                                                                                                                                                                                                                                                              <  SRR13385772.973456/192‑1 (MQ=60)
                                                                                                                         CCATTTATCAGCATGTTA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAATGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTAAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATA                                                                                                                                             <  SRR13385772.268809/300‑1 (MQ=60)
                                                                                                                                                                TTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGAA                                                                                                       >  SRR13385772.888861/1‑300 (MQ=60)
                                                                                                                                                                                      GGGGAAAAGAATAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACTATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGTGCTATAGTCCGGCGTAGCAGAAGGCAATCATCACTTTAAATCCGAGGCCACAATAGATAATTAGCACTGATATGCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAAGTACATCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGT                                                                                <  SRR13385772.330354/301‑1 (MQ=60)
                                                                                                                                                                                                AAAGTTGTTAAAGGCATTAACGTACACATTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGTGCTATGTTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCTCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTAT                                                                      <  SRR13385772.1209170/301‑1 (MQ=60)
                                                                                                                                                                                                       TTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCAGCGAAGTATTGTTAAAGTTCGATATATTAACATGACGAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATA                                                                                          <  SRR13385772.238837/274‑1 (MQ=60)
                                                                                                                                                                                                         AAAGGCATTAACGTACACAGTGATTTGATGACTCATTACGATTTTTCACTCATAGAAGTATTGTTAAATTTCGATATATTAACATGACTAACGGGCTATGGTCAGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGAAAAAAATGACCGATTACATCAAAATTCAACCGGATATTGAATATCTAAAGCAATTACAGCAGCAAAATGACGCTAGTTCCATCACTATGTATCCAGTGTATGCGTATTTGACATC                                                              >  SRR13385772.1218501/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                     TTGTTAAATGTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAG  <  SRR13385772.126696/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                     
TTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAG  >  BK006939/337558‑338118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑