Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAGAAAGGAATCATTTCTGTTGGAAAGTGCTAAGACAAATAATGAA  >  BK006939/337566‑338161
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                          
TTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCACATTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGT                                                                                                                                                                                                                                                                                                        >  SRR13385772.955468/1‑301 (MQ=60)
                      GAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGTATTGGCTGGTTGTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCTTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACATGGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAATTTTCGATGTATTAACATGACTAAAGGGCTAGGGTCCGTCGTAGCAGAAGGCAATCATCACTTT                                                                                                                                                                                                                                                                                  >  SRR13385772.229393/1‑301 (MQ=60)
                                TACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATACTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGG                                                                                                                                                                                                                                                                        >  SRR13385772.638327/1‑301 (MQ=60)
                                   TTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTTTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTTACTCATTACGATTTTTCACTCATCTATGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCTGAAGGCAATCATCACTTTAAAACCTAGGCC                                                                                                                                                                                                                                                                      >  SRR13385772.757654/1‑300 (MQ=60)
                                     AGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACA                                                                                                                                                                                                                                                                   <  SRR13385772.898348/301‑1 (MQ=60)
                                                      TTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTG                                                                                                                                                                                                                                                  >  SRR13385772.562139/1‑301 (MQ=60)
                                                                    GTCAGCATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTACATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGCAGTCGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTAACCTCCTCGAAGTATTGTTAAATTTCGATATATTAACATGAATAAAGGGCTATGGTCCGTCGTCGCAGAAGGACATCATCACTTTAAAACCGAGGCCACAATCGATACTTAGACATGATATCCTGATTGG                                                                                                                                                                                                                                     >  SRR13385772.1020403/1‑300 (MQ=60)
                                                                         AATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAA                                                                                                                                                                                                                                >  SRR13385772.534068/1‑300 (MQ=60)
                                                                                        GTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑‑TTTTTTTTTCGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGCTAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGC                                                                                                                                                                                                               >  SRR13385772.741536/1‑301 (MQ=60)
                                                                                         TTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCACTCGTTGAAGTAGATTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGACACAATCGATAATTAGCACTGATATTCTGATTGGACAAAAGGCAAAACATGACCGC                                                                                                                                                                                                               >  SRR13385772.812778/1‑301 (MQ=60)
                                                                                                                 CCATTTATCAGCATGTTA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAATGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTAAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATA                                                                                                                                                                                        <  SRR13385772.268809/300‑1 (MQ=60)
                                                                                                                                                        TTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGAA                                                                                                                                                  >  SRR13385772.888861/1‑300 (MQ=60)
                                                                                                                                                                              GGGGAAAAGAATAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACTATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGTGCTATAGTCCGGCGTAGCAGAAGGCAATCATCACTTTAAATCCGAGGCCACAATAGATAATTAGCACTGATATGCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAAGTACATCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGT                                                                                                                           <  SRR13385772.330354/301‑1 (MQ=60)
                                                                                                                                                                                        AAAGTTGTTAAAGGCATTAACGTACACATTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGTGCTATGTTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCTCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTAT                                                                                                                 <  SRR13385772.1209170/301‑1 (MQ=60)
                                                                                                                                                                                               TTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCAGCGAAGTATTGTTAAAGTTCGATATATTAACATGACGAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATA                                                                                                                                     <  SRR13385772.238837/274‑1 (MQ=60)
                                                                                                                                                                                                 AAAGGCATTAACGTACACAGTGATTTGATGACTCATTACGATTTTTCACTCATAGAAGTATTGTTAAATTTCGATATATTAACATGACTAACGGGCTATGGTCAGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGAAAAAAATGACCGATTACATCAAAATTCAACCGGATATTGAATATCTAAAGCAATTACAGCAGCAAAATGACGCTAGTTCCATCACTATGTATCCAGTGTATGCGTATTTGACATC                                                                                                         >  SRR13385772.1218501/1‑300 (MQ=60)
                                                                                                                                                                                                                                                             TTGTTAAATGTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAG                                             <  SRR13385772.126696/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                 AACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAGAAAGGAATCATTTCTGTTGG                         >  SRR13385772.1198970/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                               GCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAGAAAGGAATCATTTCTGTTGGAAAGTGCTAAGACAA          <  SRR13385772.1303515/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                CTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCAC                                                                                      <  SRR13385772.726712/224‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       CCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAGAAAGGAATCATTTCTGTTGGAAAGTGCTAAGACAAATAATGAA  <  SRR13385772.40789/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                          
TTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGTGTATGCGTATTTGCCATCATTGGATCTGACTCCTCACGTGGCATATCTAAAATTGGCACAATTGAACAACCCTGATAGAAAGGAATCATTTCTGTTGGAAAGTGCTAAGACAAATAATGAA  >  BK006939/337566‑338161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑