Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
5 4 5
6 4 5
7 4 5
8 4 5
4 16 20

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 35 126
Multiple Base Substitutions 2 22
Deletions 9 27
Insertions 7 21
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 53 196

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F26 I1 R1 9 0 38.2 1833626 94.6% 1734610 135.7
A5 F43 I1 R1 9 0 33.7 1605458 94.7% 1520368 136.7
A5 F63 I1 R1 6 0 50.5 2463686 94.5% 2328183 134.3
A5 F91 I0 R1 918 0 53.4 2573728 94.2% 2424451 136.5
A5 F91 I1 R1 13 0 256.7 11204508 95.8% 10733918 148.2
A6 F19 I1 R1 8 0 104.7 5022446 95.2% 4781368 135.4
A6 F35 I1 R1 7 0 73.8 3523680 95.1% 3351019 135.9
A6 F54 I1 R1 7 0 56.1 2676364 95.0% 2542545 135.9
A6 F80 I0 R1 1105 0 125.4 6144758 94.6% 5812941 133.2
A6 F80 I1 R1 13 0 278.9 12076352 96.1% 11605374 148.9
A7 F22 I1 R1 8 0 47.5 2293000 93.0% 2132490 137.7
A7 F36 I1 R1 4 0 31.4 1436796 93.6% 1344841 143.6
A7 F55 I1 R1 4 0 42.2 2107438 92.8% 1955702 134.2
A7 F80 I0 R1 1148 0 65.4 3296958 93.8% 3092546 131.2
A7 F80 I1 R1 14 0 208.3 9379090 95.4% 8947651 143.8
A8 F23 I1 R1 5 0 61.2 3000388 92.9% 2787360 136.0
A8 F36 I1 R1 7 0 77.4 3839086 93.1% 3574189 134.0
A8 F56 I1 R1 7 0 51.2 2540408 92.9% 2360039 134.3
A8 F83 I0 R1 969 0 96.3 4677704 94.6% 4425107 134.6
A8 F83 I1 R1 13 0 296.0 13064862 95.5% 12476943 147.3

Mutation Needle Plot

SNP: 338 (79%)INS: 30 (7%)SUB: 22 (5%)DEL: 40 (9%)430 Mutations0500,0001,000,0001,500,0002,000,0002,500,0003,000,0003,500,0004,000,0004,500,0005,000,0000246810121416182022Number of Recorded MutationsPosition

Mutation Targets

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