Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 4 5
4 3 4
5 14 18

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 22 73
Multiple Base Substitutions 0 0
Deletions 5 25
Insertions 0 0
Mobile Element Insertions 9 28
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 36 126

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 11 0 125.0 4327424 91.7% 3968247 146.9
A1 F11 I1 R1 13 0 43.3 1732204 95.7% 1657719 122.3
A1 F33 I1 R1 14 0 30.3 1339016 95.2% 1274743 112.0
A1 F72 I0 R1 93 0 97.5 3322672 98.0% 3256218 140.9
A1 F72 I1 R1 13 0 98.9 3382490 97.5% 3297927 140.1
A2 F11 I1 R1 13 0 43.1 1622188 96.5% 1565411 127.3
A2 F33 I1 R1 20 0 35.1 1378992 95.0% 1310042 124.1
A2 F73 I0 R1 135 0 75.9 2634066 97.4% 2565580 143.6
A2 F73 I1 R1 14 0 105.1 3601628 97.3% 3504384 140.4
A3 F12 I1 R1 15 0 34.7 1364998 95.3% 1300843 125.1
A3 F25 I1 R1 14 0 37.8 1449102 96.6% 1399832 125.6
A3 F34 I1 R2 14 0 36.8 1424632 95.4% 1359098 126.1
A3 F75 I0 R1 85 0 94.9 3159934 98.0% 3096735 144.0
A3 F75 I1 R1 17 0 101.0 3428476 97.2% 3332478 141.5
A4 F9 I1 R1 14 0 36.8 1385066 95.5% 1322738 129.6
A4 F30 I1 R1 14 0 32.7 1267382 95.3% 1207815 125.3
A4 F70 I0 R1 115 0 101.6 3446078 97.9% 3373710 141.6
A4 F70 I1 R1 16 0 99.6 3381834 97.7% 3304051 141.0

Mutation Needle Plot

Mutation Targets

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