Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
47 1 1
48 1 1
48 48 48

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 142 283
Multiple Base Substitutions 5 5
Deletions 28 184
Insertions 11 151
Mobile Element Insertions 16 63
Amplifications 1 1
Gene Conversions 0 0
Inversions 0 0
Total 203 687

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 16 0 66.9 2298070 98.1% 2254406 138.6
A2 F60 I1 R1 12 0 89.5 3049092 98.9% 3015551 138.7
A3 F60 I1 R1 14 0 93.5 3190714 98.8% 3152425 138.6
A4 F60 I1 R1 18 0 54.8 1909210 98.2% 1874844 138.9
A5 F60 I1 R1 13 0 86.7 2963734 98.5% 2919277 138.6
A6 F60 I1 R1 15 0 82.6 2828648 98.9% 2797532 138.9
A7 F60 I1 R1 12 0 49.9 1742736 98.3% 1713109 138.9
A8 F60 I1 R1 14 0 92.9 3257314 99.1% 3227998 139.3
A9 F60 I1 R1 15 0 43.4 1487288 98.4% 1463491 138.8
A10 F60 I1 R1 12 0 51.8 1752458 98.9% 1733180 139.5
A11 F60 I1 R1 12 0 40.2 1378958 98.9% 1363789 138.7
A12 F60 I1 R1 12 0 46.5 1584274 98.6% 1562094 139.0
A13 F60 I1 R1 15 0 47.8 1619802 98.9% 1601984 138.9
A14 F60 I1 R1 11 0 29.9 1073796 98.8% 1060910 132.6
A15 F60 I1 R1 13 0 54.8 1858072 98.6% 1832058 139.2
A16 F60 I1 R1 14 0 59.5 2012980 98.7% 1986811 139.0
A17 F60 I1 R1 10 0 26.5 909534 98.6% 896800 138.7
A18 F60 I1 R1 14 0 41.7 1431096 98.6% 1411060 138.7
A19 F60 I1 R1 13 0 105.3 3633418 98.5% 3578916 138.8
A20 F60 I1 R1 13 0 39.7 1364056 98.5% 1343595 138.8
A21 F60 I1 R1 12 0 98.5 3402390 98.5% 3351354 138.9
A22 F60 I1 R1 13 0 95.5 3214742 98.9% 3179379 139.2
A23 F60 I1 R1 21 0 86.7 2922664 98.3% 2872978 139.3
A24 F60 I1 R1 12 0 59.9 2020490 98.4% 1988162 139.4
A25 F60 I1 R1 10 0 47.3 1679494 98.8% 1659340 132.7
A26 F60 I1 R1 14 0 62.5 2134928 99.2% 2117848 139.7
A27 F60 I1 R1 11 0 60.8 2084684 98.6% 2055498 138.7
A28 F60 I1 R1 11 0 101.3 3489452 98.3% 3430131 138.7
A29 F60 I1 R1 13 0 88.8 3034634 98.5% 2989114 138.9
A30 F60 I1 R1 16 0 47.7 1604874 98.7% 1584010 139.0
A31 F60 I1 R1 12 0 96.5 3303246 98.4% 3250394 139.0
A32 F60 I1 R1 14 0 677.5 22846932 98.6% 22527074 139.4
A33 F60 I1 R1 12 0 29.2 1043458 98.6% 1028849 132.5
A34 F60 I1 R1 27 0 16.6 2193240 25.6% 561469 139.0
A35 F60 I1 R1 17 0 61.1 2085152 98.7% 2058045 139.1
A36 F60 I1 R1 15 0 27.9 999172 98.4% 983185 132.8
A37 F60 I1 R1 14 0 60.0 2022092 98.7% 1995804 139.4
A38 F60 I1 R1 14 0 95.7 3260838 99.2% 3234751 139.4
A39 F60 I1 R1 11 0 50.5 1727596 98.8% 1706864 139.4
A40 F60 I1 R1 9 0 40.6 1391456 98.8% 1374758 139.4
A41 F60 I1 R1 20 0 39.4 1357416 98.9% 1342484 138.9
A42 F60 I1 R1 18 0 124.9 4351958 99.3% 4321494 139.2
A43 F60 I1 R1 21 0 74.4 2534558 98.9% 2506677 138.9
A44 F60 I1 R1 16 0 77.8 2642868 98.6% 2605867 138.9
A45 F60 I1 R1 13 0 131.6 4491606 98.7% 4433215 138.6
A46 F60 I1 R1 20 0 83.7 2881312 98.9% 2849617 138.8
A47 F60 I1 R1 14 0 120.0 4052012 98.6% 3995283 138.7
A48 F60 I1 R1 19 0 49.8 1677902 98.7% 1656089 139.1

Mutation Needle Plot

Mutation Targets

Entries to show