Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 4 5
2 3 4
3 3 4
4 4 5
5 2 2
6 17 21

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 34 129
Multiple Base Substitutions 0 0
Deletions 16 109
Insertions 5 46
Mobile Element Insertions 17 44
Amplifications 17 23
Gene Conversions 0 0
Inversions 0 0
Total 89 351

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 12 0 92.1 3307530 90.7% 2999929 143.1
A1 F13 I1 R1 13 0 0.0 0 0.0% 0 0.0
A1 F16 I1 R1 15 0 47.8 1915362 96.3% 1844493 128.9
A1 F31 I1 R1 15 0 35.4 1381690 96.1% 1327804 130.7
A1 F66 I0 R1 74 0 91.9 3223286 98.4% 3171713 144.0
A1 F66 I1 R1 19 0 121.7 4437436 97.1% 4308750 141.0
A2 F8 I1 R1 15 0 34.4 1223644 96.4% 1179592 135.5
A2 F32 I1 R1 19 0 34.3 1374616 95.9% 1318256 128.3
A2 F68 I0 R1 89 0 88.8 3123246 98.0% 3060781 142.9
A2 F68 I1 R1 19 0 123.9 4900752 96.9% 4748828 130.5
A3 F17 I1 R1 16 0 46.4 1691090 97.0% 1640357 134.9
A3 F32 I1 R1 14 0 36.2 1403682 95.9% 1346131 125.2
A3 F68 I0 R1 109 0 92.9 3110960 97.8% 3042518 143.5
A3 F68 I1 R1 17 0 118.8 4309652 97.2% 4188981 141.1
A4 F8 I1 R1 13 0 34.3 1330464 96.7% 1286558 123.8
A4 F17 I1 R1 14 0 29.2 1108078 95.4% 1057106 137.5
A4 F17 I2 R1 13 0 35.9 1482066 95.7% 1418337 120.9
A4 F38 I1 R1 17 0 80.1 3163848 96.1% 3040457 139.0
A4 F68 I1 R1 18 0 117.5 4066914 97.1% 3948973 141.0
A5 F22 I2 R1 18 0 33.1 1444658 95.8% 1383982 128.4
A5 F43 I1 R1 15 0 94.0 3334360 97.6% 3254335 138.9

Mutation Needle Plot

Mutation Targets

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