Notes

Publication:

10.1128/AEM.00410-17

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 2
2 1 2
2 2 4

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 6 12
Multiple Base Substitutions 0 0
Deletions 4 15
Insertions 2 8
Mobile Element Insertions 1 2
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 13 37

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F45 I1 R1 10 0 43.4 855759 79.2% 677761 300.6
A1 F45 I2 R1 10 0 33.2 643268 80.6% 518474 300.6
A2 F45 I1 R1 9 0 34.1 660969 80.4% 531419 300.6
A2 F45 I2 R1 8 0 53.1 1040529 80.0% 832423 300.6

Mutation Needle Plot

Mutation Targets

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