Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 3 4
2 3 4
3 3 4
3 9 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 19 56
Multiple Base Substitutions 2 4
Deletions 8 25
Insertions 2 3
Mobile Element Insertions 4 20
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 35 108

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 9 0 111.5 3804840 91.9% 3496647 148.7
A1 F44 I1 R1 11 0 128.4 4168448 96.1% 4005878 148.8
A1 F101 I0 R1 483 0 64.2 2070148 97.0% 2008043 148.9
A1 F101 I1 R1 12 0 82.1 2632410 96.8% 2548172 149.9
A2 F29 I1 R1 8 0 124.1 4464352 87.4% 3901843 148.6
A2 F46 I1 R1 15 0 156.5 5349032 95.3% 5097627 148.7
A2 F107 I0 R1 1865 0 145.5 4796230 94.7% 4542029 148.6
A2 F107 I1 R1 15 0 142.8 4644316 95.9% 4453899 148.8
A3 F37 I1 R1 14 0 104.6 3851528 86.9% 3346977 148.3
A3 F64 I1 R1 15 0 72.1 2636428 86.9% 2291055 148.9
A3 F93 I0 R1 959 0 66.3 2153590 96.0% 2067446 148.9
A3 F93 I1 R1 14 0 76.6 2555834 93.7% 2394816 148.4

Mutation Needle Plot

Mutation Targets

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