Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
19 3 4
20 3 4
21 3 4
22 3 4
23 3 4
24 2 3
6 17 23

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 33 104
Multiple Base Substitutions 0 0
Deletions 11 91
Insertions 6 10
Mobile Element Insertions 4 31
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 54 236

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F20 I1 R1 14 0 153.4 5088792 94.2% 4793642 148.8
A19 F48 I1 R1 13 0 122.7 4250786 91.9% 3906472 146.1
A19 F67 I0 R1 1180 0 95.6 3123286 96.2% 3004601 148.9
A19 F67 I1 R1 17 0 115.0 3808968 94.3% 3591856 148.3
A20 F24 I1 R1 13 0 124.1 4151510 93.7% 3889964 148.4
A20 F57 I1 R1 15 0 110.1 3809998 91.8% 3497578 146.8
A20 F78 I0 R1 1303 0 126.6 4180938 95.0% 3971891 148.7
A20 F78 I1 R1 19 0 123.2 4115650 93.7% 3856364 148.1
A21 F24 I1 R1 13 0 94.5 3145852 94.3% 2966538 148.2
A21 F55 I1 R1 14 0 194.5 6614692 92.9% 6145048 147.4
A21 F74 I0 R1 1360 0 145.0 4805306 95.1% 4569846 148.5
A21 F74 I1 R1 14 0 130.2 4625780 88.4% 4089189 148.1
A22 F24 I1 R1 12 0 213.3 7132632 94.1% 6711806 148.4
A22 F51 I1 R1 14 0 147.0 4978548 93.1% 4635028 148.3
A22 F67 I0 R1 1379 0 122.4 4114086 93.9% 3863126 148.5
A22 F67 I1 R1 15 0 165.8 5460530 95.2% 5198424 148.7
A23 F22 I1 R1 13 0 145.8 5008556 92.2% 4617888 147.4
A23 F55 I1 R1 21 0 149.2 4867640 95.5% 4648596 148.8
A23 F75 I0 R1 504 0 161.8 5268206 96.1% 5062745 148.8
A23 F75 I1 R1 17 0 210.7 6969222 94.5% 6585914 148.5
A24 F19 I1 R1 12 0 143.8 4839640 93.6% 4529903 148.5
A24 F72 I0 R1 398 0 176.3 5868954 94.6% 5552030 148.7
A24 F72 I1 R1 15 0 113.3 3764430 94.6% 3561150 148.6

Mutation Needle Plot

Mutation Targets

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