Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
7 3 4
8 3 4
9 3 3
10 3 4
11 3 4
12 3 4
6 18 23

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 15 20
Multiple Base Substitutions 0 0
Deletions 4 27
Insertions 0 0
Mobile Element Insertions 6 8
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 25 55

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F56 I1 R1 13 0 83.2 2703502 96.0% 2595361 148.9
A7 F87 I1 R1 12 0 129.0 4248330 94.9% 4031665 148.7
A7 F114 I0 R1 1053 0 110.1 3583272 96.0% 3439941 148.9
A7 F114 I1 R1 13 0 102.4 3340740 95.7% 3197088 148.8
A8 F35 I1 R1 11 0 96.0 3121340 96.1% 2999607 148.9
A8 F53 I1 R1 11 0 354.9 11572772 96.0% 11109861 148.7
A8 F111 I0 R1 1181 0 87.7 2863510 95.5% 2734652 148.9
A8 F111 I1 R1 13 0 101.8 3314942 96.0% 3182344 148.9
A9 F55 I1 R1 11 0 133.9 4365994 95.7% 4178256 148.8
A9 F88 I1 R1 14 0 77.9 2519200 96.8% 2438585 149.0
A9 F118 I1 R1 13 0 170.9 5645416 94.8% 5351854 148.6
A10 F54 I1 R1 12 0 178.0 5849886 95.0% 5557391 148.6
A10 F84 I1 R1 13 0 124.2 4044538 95.9% 3878711 148.9
A10 F113 I0 R1 1054 0 179.8 5862412 95.5% 5598603 148.8
A10 F113 I1 R1 13 0 126.1 4107508 95.8% 3934992 148.9
A11 F37 I1 R1 11 0 96.4 3140076 96.0% 3014472 148.9
A11 F69 I1 R1 14 0 90.0 2937596 95.8% 2814216 148.8
A11 F111 I0 R1 539 0 153.3 4946188 96.4% 4768125 148.9
A11 F111 I1 R1 13 0 106.8 3514394 94.8% 3331645 148.8
A12 F51 I1 R1 11 0 101.7 3309384 96.1% 3180318 148.7
A12 F83 I1 R1 14 0 129.8 4284610 94.8% 4061810 148.7
A12 F111 I0 R1 405 0 129.9 4343832 94.0% 4083202 148.7
A12 F111 I1 R1 15 0 103.3 3361404 95.9% 3223586 148.9

Mutation Needle Plot

Mutation Targets

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