mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 46 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 4,741,260 | 0 | C | G | 75.6% | ‑2.4 / 70.3 | 83 | intergenic (+497/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,238 | 0 | C | G | 72.1% | 0.4 / 61.8 | 68 | intergenic (+475/+278) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,240 | 0 | A | C | 72.1% | 0.1 / 33.8 | 68 | intergenic (+477/+276) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,245 | 0 | A | . | 72.1% | 113.2 / 92.5 | 68 | intergenic (+482/+271) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,228 | 1 | . | C | 69.1% | 36.0 / 82.1 | 68 | intergenic (+465/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,230 | 0 | A | G | 69.1% | 10.0 / 41.9 | 68 | intergenic (+467/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,808,180 | 0 | A | . | 65.7% | 12.4 / 82.5 | 43 | intergenic (‑289/‑266) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 1,499,497 | 1 | . | C | 63.7% | 230.7 / inf | 311 | intergenic (+74/‑90) | trpS/zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| * | AE015451 | 1,499,498 | 0 | T | G | 63.5% | 62.0 / inf | 311 | intergenic (+75/‑89) | trpS/zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| * | AE015451 | 4,808,179 | 0 | G | . | 59.0% | ‑2.5 / 78.3 | 39 | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,348,705 | 0 | A | G | 48.8% | 445.9 / 160.5 | 455 | intergenic (‑70/+404) | PP_3820/galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | AE015451 | 699,722 | 0 | A | G | 47.9% | 505.4 / 87.7 | 441 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | AE015451 | 1,327,121 | 0 | C | T | 43.1% | 341.0 / inf | 540 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | AE015451 | 195,634 | 0 | C | T | 41.6% | 129.3 / inf | 369 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | AE015451 | 4,808,176 | 0 | C | . | 40.0% | 11.2 / 52.7 | 35 | intergenic (‑285/‑270) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,177 | 0 | G | . | 40.0% | ‑2.5 / 51.0 | 35 | intergenic (‑286/‑269) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,178 | 0 | C | . | 40.0% | 6.6 / 52.7 | 35 | intergenic (‑287/‑268) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,172 | 0 | C | . | 36.8% | 10.9 / 51.8 | 39 | intergenic (‑281/‑274) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 1,499,498 | 1 | . | G | 36.3% | 96.7 / inf | 311 | intergenic (+75/‑89) | trpS/zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| * | AE015451 | 4,808,171 | 0 | C | . | 35.9% | 5.4 / 51.8 | 39 | intergenic (‑280/‑275) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4808174 | 33 (0.110) | 57 (0.200) | 49/226 | 9.4 | 68.3% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808189 = | 22 (0.080) | intergenic (‑298/‑257) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 1 = | 0 (0.000) | 98 (0.310) | 40/242 | 12.0 | 100% | intergenic (–/+146) | –/parB | –/probable chromosome‑partitioning protein |
| ? | AE015451 | = 6181873 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||
| * | ? | AE015451 | = 4808179 | 22 (0.070) | 48 (0.150) | 32/240 | 13.8 | 60.5% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808194 = | 41 (0.130) | intergenic (‑303/‑252) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 1070247 = | 262 (0.840) | 47 (0.170) | 26/216 | 14.3 | 25.2% | intergenic (+47/+95) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| ? | AE015451 | = 4808161 | 45 (0.160) | intergenic (‑270/‑285) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 4808174 = | 49 (0.160) | 23 (0.100) | 12/172 | 17.2 | 22.1% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 127 (0.570) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | 1184570 = | 315 (1.010) | 10 (0.040) | 10/212 | 20.4 | 5.9% | intergenic (‑186/‑226) | mltF/purL | membrane‑bound lytic murein transglycosylase F/Phosphoribosylformylglycinamidine synthase |
| ? | AE015451 | = 4808159 | 45 (0.160) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | = 4808174 | 47 (0.150) | 10 (0.040) | 10/214 | 20.5 | 5.3% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5737599 = | 317 (1.150) | intergenic (‑154/+48) | hutU/PP_5034 | Urocanate hydratase/Uncharacterized 21.2 kDa protein in hutC 3'region | |||||
| * | ? | AE015451 | 4808193 = | 50 (0.160) | 15 (0.050) | 9/228 | 21.7 | 11.3% | intergenic (‑302/‑253) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 4945201 | 189 (0.640) | intergenic (+561/+237) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | 1683236 = | 326 (1.040) | 19 (0.070) | 7/208 | 22.0 | 11.2% | intergenic (+45/‑186) | recJ/PP_1478 | ssDNA‑specific exonuclease RecJ/putative Xenobiotic reductase |
| ? | AE015451 | = 4808162 | 23 (0.090) | intergenic (‑271/‑284) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 4808181 = | 44 (0.140) | 10 (0.030) | 8/226 | 22.2 | 18.5% | intergenic (‑290/‑265) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808201 = | 47 (0.160) | intergenic (‑310/‑245) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||