mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 4,741,231 | 0 | C | G | 67.9% | 32.1 / 29.0 | 28 | intergenic (+468/+285) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,234 | 0 | C | T | 67.9% | 35.7 / 23.1 | 28 | intergenic (+471/+282) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,808,171 | 0 | C | . | 63.6% | ‑5.6 / 16.1 | 11 | intergenic (‑280/‑275) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,172 | 0 | C | . | 63.6% | ‑5.9 / 16.8 | 11 | intergenic (‑281/‑274) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,173 | 0 | G | . | 63.6% | ‑5.4 / 16.1 | 11 | intergenic (‑282/‑273) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,174 | 0 | C | . | 63.6% | ‑5.7 / 16.3 | 11 | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,175 | 0 | C | . | 63.6% | ‑6.0 / 16.5 | 11 | intergenic (‑284/‑271) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,741,245 | 0 | A | . | 60.7% | 25.8 / 54.0 | 28 | intergenic (+482/+271) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,808,179 | 0 | G | . | 60.0% | 15.4 / 28.1 | 15 | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,741,238 | 0 | C | G | 57.1% | 10.4 / 45.1 | 28 | intergenic (+475/+278) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,240 | 0 | A | C | 57.1% | 15.8 / 35.2 | 28 | intergenic (+477/+276) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,241 | 0 | C | T | 57.1% | 3.7 / 37.0 | 28 | intergenic (+478/+275) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,255 | 0 | C | T | 53.6% | 4.5 / 40.2 | 28 | intergenic (+492/+261) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,257 | 0 | A | C | 53.6% | 6.7 / 42.8 | 28 | intergenic (+494/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,260 | 0 | C | G | 53.6% | ‑0.5 / 52.4 | 28 | intergenic (+497/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,261 | 0 | A | C | 53.6% | 48.4 / 64.4 | 28 | intergenic (+498/+255) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,808,180 | 0 | A | . | 52.9% | 25.3 / 43.6 | 17 | intergenic (‑289/‑266) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 699,722 | 0 | A | G | 50.4% | 40.8 / inf | 248 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | AE015451 | 4,348,705 | 0 | A | G | 47.4% | 293.4 / inf | 441 | intergenic (‑70/+404) | PP_3820/galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | AE015451 | 4,741,254 | 1 | . | T | 46.4% | 60.6 / 75.0 | 28 | intergenic (+491/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4808174 | 13 (0.050) | 26 (0.110) | 21/276 | 27.5 | 70.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808189 = | 10 (0.040) | intergenic (‑298/‑257) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 2414860 = | 178 (0.700) | 5 (0.030) | 5/172 | 29.1 | 4.2% | coding (58/198 nt) | PP_2115 | conserved protein of unknown function |
| ? | AE015451 | = 2414853 | 121 (0.810) | coding (51/198 nt) | PP_2115 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 2478409 = | 168 (0.660) | 4 (0.020) | 4/240 | 37.3 | 2.8% | coding (106/444 nt) | PP_2172 | conserved exported protein of unknown function |
| ? | AE015451 | = 2478405 | 140 (0.670) | coding (102/444 nt) | PP_2172 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 1951987 | 284 (1.120) | 7 (0.030) | 6/276 | 38.3 | 2.7% | coding (1554/1965 nt) | mnmC | methyltransferase/FAD‑dependent oxidoreductase |
| ? | AE015451 | 1952486 = | 236 (0.980) | coding (1055/1965 nt) | mnmC | methyltransferase/FAD‑dependent oxidoreductase | |||||
| * | ? | AE015451 | = 4808179 | 15 (0.060) | 11 (0.040) | 7/290 | 38.4 | 36.7% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808194 = | 23 (0.090) | intergenic (‑303/‑252) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | = 4246099 | 265 (1.040) | 5 (0.020) | 5/266 | 38.5 | 2.0% | coding (176/1230 nt) | alr | Alanine racemase |
| ? | AE015451 | 4246389 = | 251 (1.090) | coding (1528/1608 nt) | aruI | putative 2‑ketoarginine decarboxylase AruI | |||||
| * | ? | AE015451 | = 1780066 | 183 (0.720) | 5 (0.020) | 5/278 | 39.4 | 2.8% | intergenic (+25/+81) | PP_1587/dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| ? | AE015451 | 1780129 = | 175 (0.720) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative | |||||
| * | ? | AE015451 | = 5277396 | 279 (1.100) | 4 (0.020) | 4/266 | 39.5 | 1.6% | coding (357/1221 nt) | PP_4652 | putative Membrane protein |
| ? | AE015451 | 5277831 = | 226 (0.980) | coding (792/1221 nt) | PP_4652 | putative Membrane protein | |||||
| * | ? | AE015451 | = 5913803 | 235 (0.930) | 4 (0.020) | 4/282 | 40.8 | 1.5% | coding (1072/1377 nt) | spuI | glutamylpolyamine synthetase |
| ? | AE015451 | 5914320 = | 297 (1.210) | coding (1240/1299 nt) | argA | acetylglutamate kinase‑like protein (regulatory domain)/amino acid N‑acetyltransferase | |||||
| * | ? | AE015451 | = 4808130 | 52 (0.200) | 6 (0.020) +ATCG |
4/284 | 41.0 | 15.2% | intergenic (‑239/‑316) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808181 = | 17 (0.070) | intergenic (‑290/‑265) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||