mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,866 | +C | intergenic (+881/‑988) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,125 | +T | coding (210/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,419,549 | +C | intergenic (‑38/+98) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | 1 bp→CG | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,508 | +C | intergenic (+85/‑79) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,932,640 | +C | intergenic (‑107/+43) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,445,964 | G→T | E80* (GAG→TAG) | PP_2144 → | Transcriptional regulator, TetR family |
| RA | 2,958,523 | C→T | A428V (GCA→GTA) | PP_2589 → | Aldehyde dehydrogenase family protein |
| RA | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,498,318 | (T)7→6 | coding (1686/2049 nt) | PP_3988 ← | conserved protein of unknown function |
| RA | 4,586,030 | 2 bp→TC | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,035 | +G | intergenic (+118/+97) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,057 | +C | intergenic (+140/+75) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,740,811 | (T)7→6 | intergenic (+48/+705) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | +T | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| JC | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| JC | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,751 | +G | intergenic (+113/+27) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,740,555 | C→T | S175N (AGC→AAC) | PP_5037 ← | lipocalin family lipoprotein |
| RA | 6,013,885 | T→C | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 171308–175063 | 176357–175340 | 278–5050 | 162 [159] | [160] 162 | PP_16SA–PP_5SA | PP_16SA,PP_23SA,PP_5SA |
| * | * | ÷ | AE015451 | 176587–180493 | 181792–180770 | 278–5206 | 162 [161] | [160] 162 | PP_16SB–PP_r01 | PP_16SB,PP_23SB,PP_r01 |
| * | * | ÷ | AE015451 | 527978–528623 | 529656–528900 | 278–1679 | 163 [159] | [160] 162 | PP_23SC | 23S ribosomal RNA |
| * | * | ÷ | AE015451 | 699753–701711 | 702721–701988 | 278–2969 | 167 [161] | [158] 163 | [PP_23SD] | [PP_23SD] |
| * | * | ÷ | AE015451 | 741524–742232 | 743343–742539 | 308–1820 | 163 [161] | [161] 163 | PP_0635 | PP_0635 |
| * | * | ÷ | AE015451 | 744982–745977 | 746941–746028 | 52–1960 | 163 [159] | [159] 165 | [PP_0637]–PP_0638 | [PP_0637],PP_0638 |
| * | * | ÷ | AE015451 | 1296530–1298503 | 1298503 | 1–1974 | 162 [160] | [160] 164 | PP_1133 | PP_1133 |
| * | * | ÷ | AE015451 | 1327171–1328841 | 1330479–1329454 | 614–3309 | 162 [159] | [161] 162 | PP_23SE–PP_5SE | PP_23SE,PP_5SE |
| * | * | ÷ | AE015451 | 1440042–1442014 | 1442014 | 1–1973 | 162 [160] | [160] 162 | PP_1260 | PP_1260 |
| * | * | ÷ | AE015451 | 2551370–2552241 | 2553874–2552854 | 614–2505 | 162 [161] | [161] 162 | [PP_23SF]–PP_5SF | [PP_23SF],PP_5SF |
| * | * | ÷ | AE015451 | 2937717–2939359 | 2939359 | 1–1643 | 163 [161] | [161] 163 | PP_2570 | PP_2570 |
| * | * | ÷ | AE015451 | 3522864–3523710 | 3525159–3524441 | 732–2296 | 162 [157] | [161] 165 | PP_3113–PP_3115 | PP_3113,PP_3114,PP_3115 |
| * | * | ÷ | AE015451 | 3826300–3828250 | 3828250 | 1–1951 | 164 [158] | [161] 165 | PP_3381 | PP_3381 |
| * | * | ÷ | AE015451 | 3969324–3970073 | 3971600–3970862 | 790–2277 | 162 [159] | [160] 163 | PP_3499–[PP_3501] | PP_3499,PP_3500,[PP_3501] |
| * | * | ÷ | AE015451 | 4073688–4075712 | 4075712 | 1–2025 | 162 [161] | [160] 164 | PP_3586 | PP_3586 |
| * | * | ÷ | AE015451 | 4391571–4392375 | 4393389–4392682 | 308–1819 | 163 [158] | [161] 164 | PP_3868 | PP_3868 |
| * | * | ÷ | AE015451 | 4486345–4487103 | 4488621–4487892 | 790–2277 | 162 [159] | [160] 162 | PP_3979–[PP_3981] | PP_3979,PP_3980,[PP_3981] |
| * | * | ÷ | AE015451 | 4493353–4494087 | 4495657–4494818 | 732–2305 | 164 [161] | [161] 166 | PP_3984–PP_3986 | PP_3984,PP_3985,PP_3986 |
| * | * | ÷ | AE015451 | 4536254–4537136 | 4538190–4537187 | 52–1937 | 164 [161] | [159] 163 | PP_4024–[PP_4025] | PP_4024,[PP_4025] |
| * | * | ÷ | AE015451 | 5033199–5033952 | 5035479–5034741 | 790–2281 | 164 [161] | [160] 164 | PP_4437–[PP_4439] | PP_4437,PP_4438,[PP_4439] |
| * | * | ÷ | AE015451 | 5036154–5036912 | 5038424–5037671 | 760–2271 | 163 [160] | [159] 165 | PP_4441–[PP_4443] | PP_4441,PP_4442,[PP_4443] |
| * | * | ÷ | AE015451 | 5222602–5224595 | 5224595 | 1–1994 | 163 [161] | [161] 163 | PP_4603 | PP_4603 |
| * | * | ÷ | AE015451 | 5307612–5308452 | 5310729–5309065 | 614–3118 | 163 [160] | [161] 164 | PP_23SG | PP_23SG |
| * | * | ÷ | AE015451 | 5401800–5402803 | 5403743–5402854 | 52–1944 | 163 [161] | [159] 162 | [PP_4745]–PP_4746 | [PP_4745],PP_4746 |
| * | * | ÷ | AE015451 | 5453071–5454663 | 5454663 | 1–1593 | 165 [161] | [160] 164 | [PP_4791] | [PP_4791] |
| * | * | ÷ | AE015451 | 6152952–6153712 | 6155248–6154471 | 760–2297 | 162 [161] | [160] 164 | [PP_5396]–PP_5398 | [PP_5396],PP_5397,PP_5398 |