| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 3748324 | 18 (0.130) | 142 (1.060) | 99/178 | 0.1 | 88.8% | coding (657/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | AC_000091 | 4056220 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
Only 100 of 309 total aligned reads displayed.
ATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAGTAAGA > AC_000091/3748235‑3748413 | ggacagctgatagaaacggaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCa > 2:2021535‑M1/82‑90 (MQ=255) cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAg < 2:473147‑M1/12‑1 (MQ=255) tGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggta < 1:2171584‑M1/90‑5 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaa > 2:1245724‑M1/76‑90 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaaa < 1:673363‑M1/16‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaat > 2:2185402‑M1/74‑90 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaat > 1:2722789‑M1/74‑90 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaata < 2:603448‑M1/18‑1 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaata > 2:846304‑M1/73‑90 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaataa > 2:291324‑M1/72‑90 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaataa > 1:1683635‑M1/72‑90 (MQ=255) agagCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgact > 1:1904223‑M1/1‑80 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaataat < 1:405926‑M1/20‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATc > 1:1559039‑M1/70‑90 (MQ=255) agCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactcc > 1:1457313‑M1/1‑78 (MQ=255) agCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactcc > 1:909541‑M1/1‑78 (MQ=255) gCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactcca < 2:564357‑M1/90‑14 (MQ=255) gaagaGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaactt < 1:1775552‑M1/90‑18 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCt > 2:94128‑M1/65‑90 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTggg > 1:3076846‑M1/62‑90 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGaa > 2:1357687‑M1/60‑90 (MQ=255) aTAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgat > 2:1152150‑M1/1‑67 (MQ=255) aaaTCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatag < 1:3311230‑M1/90‑26 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATAtt < 1:1831360‑M1/35‑1 (MQ=255) ggagcacctcaaaaacaccatcattcactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTg > 2:107343‑M1/55‑90 (MQ=255) ggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTg < 1:1189873‑M1/36‑1 (MQ=255) cACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaccttattgatagtgtt < 2:253348‑M1/90‑30 (MQ=255) cACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgtt < 1:2265753‑M1/90‑30 (MQ=255) cACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgtt < 2:1112008‑M1/90‑30 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGcc > 2:762621‑M1/53‑90 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCg > 2:1674098‑M1/52‑90 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCg > 1:1949156‑M1/52‑90 (MQ=255) ccAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgtttt < 1:562165‑M1/90‑32 (MQ=255) aGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttat > 1:445348‑M1/1‑57 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGa < 1:1004874‑M1/43‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGaa > 2:1287540‑M1/47‑90 (MQ=255) gcCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgtt < 1:606498‑M1/90‑37 (MQ=255) caacaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGaaa < 2:2262325‑M1/45‑1 (MQ=255) ccAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttc < 1:1978244‑M1/90‑38 (MQ=255) ccAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttc > 2:1001823‑M1/1‑53 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAAc < 1:2321866‑M1/46‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAAcc > 1:2503062‑M1/44‑90 (MQ=255) agcagcGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcag < 2:3480297‑M1/90‑40 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCa > 2:427531‑M1/43‑90 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCa > 1:1036879‑M1/43‑90 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCa < 1:986641‑M1/48‑1 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCaa < 2:525772‑M1/49‑1 (MQ=255) cagaGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagat < 2:3226031‑M1/90‑42 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCaaa > 1:2292016‑M1/41‑90 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGa < 2:796089‑M1/53‑1 (MQ=255) gAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatg > 1:2227753‑M1/1‑45 (MQ=255) aaCCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgc > 2:2812034‑M1/1‑44 (MQ=255) aCCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:159704‑M1/90‑48 (MQ=255) aCCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcc > 2:1929175‑M1/1‑43 (MQ=255) aaTACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:2500785‑M1/1‑39 (MQ=255) cactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGac < 1:2441186‑M1/61‑1 (MQ=255) aTACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg < 1:3377950‑M1/90‑53 (MQ=255) actaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGaca > 1:3187952‑M1/29‑90 (MQ=255) ctaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGacac < 1:2528505‑M1/63‑1 (MQ=255) ctaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGacac < 2:2503166‑M1/63‑1 (MQ=255) taaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGacaca < 2:1605275‑M1/64‑1 (MQ=255) cACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt < 2:2430381‑M1/90‑57 (MQ=255) cACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt > 2:3173022‑M1/1‑34 (MQ=255) aatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACAcc > 1:2946437‑M1/25‑90 (MQ=255) cGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg > 2:2965801‑M1/1‑32 (MQ=255) tttGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat > 1:2825531‑M1/1‑28 (MQ=255) tttGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat > 2:2117574‑M1/1‑28 (MQ=255) taagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCaaa < 1:2629677‑M1/72‑1 (MQ=255) tGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 2:1774948‑M1/1‑26 (MQ=255) aagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAg < 1:3440062‑M1/73‑1 (MQ=255) gttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGcc > 1:27054‑M1/16‑90 (MQ=255) gttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGcc > 2:2363521‑M1/16‑90 (MQ=255) ttAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc > 1:3215304‑M1/1‑23 (MQ=255) aCTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc > 2:1423433‑M1/1‑20 (MQ=255) cTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca > 1:2983093‑M1/1‑19 (MQ=255) cTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca > 2:729655‑M1/1‑19 (MQ=255) tATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc > 2:3403167‑M1/1‑17 (MQ=255) atcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGata < 1:1383867‑M1/84‑1 (MQ=255) atcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGata < 2:3436465‑M1/84‑1 (MQ=255) atcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGata < 1:1302951‑M1/84‑1 (MQ=255) tcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGatat < 1:2781514‑M1/85‑1 (MQ=255) tttGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt > 1:800958‑M1/1‑13 (MQ=255) ttGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt > 1:1649864‑M1/1‑12 (MQ=255) accCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATAc < 1:1145998‑M1/87‑1 (MQ=255) ccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACg > 2:2679003‑M1/3‑90 (MQ=255) gCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:1899043‑M1/1‑10 (MQ=255) cCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACgg > 2:3300919‑M1/2‑90 (MQ=255) cGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga < 2:3119204‑M1/90‑82 (MQ=255) cGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga > 1:1346257‑M1/1‑9 (MQ=255) ttttCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaga > 2:1013108‑M1/1‑7 (MQ=255) ttttCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGaa < 2:2070419/90‑1 (MQ=255) ttttCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGaa > 1:2006228/1‑90 (MQ=255) tttCCATAGCAAATTATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAg < 2:2723847/90‑1 (MQ=255) ttCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac < 1:744019‑M1/90‑86 (MQ=255) ttCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAGt > 2:200505/1‑90 (MQ=255) tCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacg > 1:1065960‑M1/1‑4 (MQ=255) ccAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga > 1:1505705‑M1/1‑3 (MQ=255) ccATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAGTaa > 2:1532382/1‑90 (MQ=255) ccATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAGTaa < 1:279353/90‑1 (MQ=255) ccATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAGTaa > 1:3052614/1‑90 (MQ=255) | ATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGGAAGTAAGA > AC_000091/3748235‑3748413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |