BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AC_000091	= 3748324	18 (0.130)	142 (1.060)	99/178	0.1	88.8%	coding (657/984 nt)	tnaB	tryptophan transporter of low affinity
*	?	AC_000091	4056220 =	NA (NA)	142 (1.060)	99/178	0.1	88.8%	intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'

Only 100 of 145 total aligned reads displayed.

TTTAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAC  >  AC_000091/4056131‑4056304

tttAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCg                                                                                      <  1:336253/90‑1 (MQ=255)

  tAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                                                    <  1:1190075/90‑1 (MQ=255)

    aGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTaa                                                                                  <  2:211305/90‑1 (MQ=255)

    aGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTaa                                                                                  <  2:2788174/90‑1 (MQ=255)

     gAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAAt                                                                                 <  1:1075207/90‑1 (MQ=255)

      aaTCAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATg                                                                                <  2:2845815/90‑1 (MQ=255)

       aTGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                                               <  2:2920595/90‑1 (MQ=255)

       aTGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                                               >  1:1719345/1‑90 (MQ=255)

        tGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGAc                                                                              >  2:428404/1‑90 (MQ=255)

        tGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGAc                                                                              >  1:648622/1‑90 (MQ=255)

        tGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGAc                                                                              <  1:397680/90‑1 (MQ=255)

         gAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACt                                                                             <  2:1046925/90‑1 (MQ=255)

         gAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACt                                                                             >  1:1348698/1‑90 (MQ=255)

          aaGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTc                                                                            <  1:2249820/90‑1 (MQ=255)

          aaGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTc                                                                            >  1:28651/1‑90 (MQ=255)

           agagAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTcc                                                                           <  2:3387271/90‑1 (MQ=255)

            gagaAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCa                                                                          <  2:1242109/90‑1 (MQ=255)

            gagaAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCa                                                                          <  1:1750411/90‑1 (MQ=255)

             agaAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCaa                                                                         >  2:1525927/1‑90 (MQ=255)

               aaaTCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACt                                                                       >  2:2864162/1‑90 (MQ=255)

                aaTCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACtt                                                                      <  2:3199202/90‑1 (MQ=255)

                aaTCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACtt                                                                      >  2:3104899/1‑90 (MQ=255)

                     cTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGa                                                                 >  1:902876/1‑90 (MQ=255)

                      tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                                                <  1:1785926/90‑1 (MQ=255)

                      tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                                                >  2:770088/1‑90 (MQ=255)

                        aaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAg                                                              >  1:1087048/1‑90 (MQ=255)

                         aCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAgt                                                             >  2:1751149/1‑90 (MQ=255)

                           gAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAgtgt                                                           >  2:1120444/1‑90 (MQ=255)

                             aCTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGttt                                                         <  1:2157115/90‑1 (MQ=255)

                               tGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                       >  2:2612129/1‑90 (MQ=255)

                                gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                      <  2:1585796/90‑1 (MQ=255)

                                gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                      >  1:1489315/1‑90 (MQ=255)

                                  atatatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                    >  2:3378532/1‑90 (MQ=255)

                                   tatatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                   <  1:2100240/90‑1 (MQ=255)

                                   tatatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                   <  1:1849837/90‑1 (MQ=255)

                                    atatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                  <  2:743177/90‑1 (MQ=255)

                                     tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                 <  1:1185198/90‑1 (MQ=255)

                                     tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                 <  1:1748375/90‑1 (MQ=255)

                                     tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                 >  1:3192967/1‑90 (MQ=255)

                                         ttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                                             >  2:2915577/1‑90 (MQ=255)

                                          tCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                            >  2:969049/1‑90 (MQ=255)

                                          tCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                            >  1:221926/1‑90 (MQ=255)

                                           cTGTGCCAATATTATCTCTAATTTCAAAGAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                           >  2:2200393/1‑90 (MQ=255)

                                           cTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCACCTTATTGATAGTGTTTTATGTTCAGATAAt                                           <  1:2747516/90‑1 (MQ=255)

                                            tgtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                          >  2:3113561/1‑90 (MQ=255)

                                            tgtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                          <  2:1755505/90‑1 (MQ=255)

                                             gtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc                                         <  1:2536747/90‑1 (MQ=255)

                                              tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        <  1:3444610/90‑1 (MQ=255)

                                              tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        >  1:2184334/1‑90 (MQ=255)

                                              tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        >  1:2412132/1‑90 (MQ=255)

                                              tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        >  2:851566/1‑90 (MQ=255)

                                                 cAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGa                                     <  2:1119448/90‑1 (MQ=255)

                                                  aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    <  1:1668222/90‑1 (MQ=255)

                                                  aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    >  1:2087833/1‑90 (MQ=255)

                                                  aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    >  1:2407658/1‑90 (MQ=255)

                                                  aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    >  2:2554924/1‑90 (MQ=255)

                                                  aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    <  1:597550/90‑1 (MQ=255)

                                                   atatTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                   >  1:2330850/1‑90 (MQ=255)

                                                    tattatCTCTAATTTCAAAAACGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                  <  2:2107360/90‑1 (MQ=255)

                                                    tattatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                  >  1:3151574/1‑90 (MQ=255)

                                                     attatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                 >  2:2354899/1‑90 (MQ=255)

                                                      ttatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                <  1:1463349/90‑1 (MQ=255)

                                                        atCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                              <  1:2431368/90‑1 (MQ=255)

                                                         tctcTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                             >  1:2741197/1‑90 (MQ=255)

                                                         tctcTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                             <  2:1869427/90‑1 (MQ=255)

                                                            ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                          >  2:3258919/1‑90 (MQ=255)

                                                            ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                          <  2:3311634/90‑1 (MQ=255)

                                                             tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                         >  1:3000815/1‑90 (MQ=255)

                                                             tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                         >  1:2543160/1‑90 (MQ=255)

                                                             tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                         >  2:1270846/1‑90 (MQ=255)

                                                              naTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGANNNTNTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                        >  2:895519/2‑90 (MQ=255)

                                                              aaTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                        <  1:3076805/90‑1 (MQ=255)

                                                               aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                       >  1:15527/1‑90 (MQ=255)

                                                               aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                       >  2:3423796/1‑90 (MQ=255)

                                                                 ttCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                     >  2:2613414/1‑90 (MQ=255)

                                                                 ttCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                     >  1:3184036/1‑90 (MQ=255)

                                                                   cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                   >  2:2974448/1‑90 (MQ=255)

                                                                   cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                   >  2:3195037/1‑90 (MQ=255)

                                                                    aaaaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                  >  2:2817760/1‑90 (MQ=255)

                                                                    aaaaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                  >  1:1309638/1‑90 (MQ=255)

                                                                      aaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                >  2:589755/1‑90 (MQ=255)

                                                                       aaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc               <  2:1863901/90‑1 (MQ=255)

                                                                       aaaGTTACTTTTAATGTCGGTAATGACTCCAACATATTGATAGTGTTTTATGTTCAAATAATGCCCGATGACTTTGTCATGCAGCTCCAc               <  2:2536023/90‑1 (MQ=255)

                                                                         aGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg             <  2:2448575/90‑1 (MQ=255)

                                                                         aGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATAACTTTGTCATGCAGCTCCACCg             >  1:367139/1‑90 (MQ=255)

                                                                           ttACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt           <  1:1781427/90‑1 (MQ=255)

                                                                              cTTTTAATGTCGGTAATGACTCCAACTTTTTGTTAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt        >  2:160007/1‑90 (MQ=255)

                                                                              cTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt        <  1:1317789/90‑1 (MQ=39)

                                                                              cTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt        <  1:1276546/90‑1 (MQ=39)

                                                                              cTTTTAATGTCGGTAATGACTCCAACTTATTGATAGCGTTTTATGTTCAGATAATGCCCGATAACTTTGCCATGCGGCTCCACCGCtttt        >  2:2424275/1‑90 (MQ=14)

                                                                               ttttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg       >  1:873240/1‑90 (MQ=38)

                                                                               ttttAATGTCGGTAATGACTCCAACTTATTGATAGAGTTTTATGTTCAGATACTGCTCGATGACTTTGTCATGCAGCTCCACCGATTTTg       >  1:1849743/1‑90 (MQ=11)

                                                                                 ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag     <  1:3440866/90‑1 (MQ=35)

                                                                                 ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag     >  2:3342970/1‑90 (MQ=35)

                                                                                 ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag     <  2:794674/90‑1 (MQ=35)

                                                                                  tAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgaga    >  2:3433198/1‑90 (MQ=33)

                                                                                   aaTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa   >  2:1971888/1‑90 (MQ=32)

                                                                                   aaTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa   <  1:1020201/90‑1 (MQ=32)

                                                                                   aaTGTCGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTATGTCATGCAGCTCCACCGATTTTGAGaa   >  2:2483334/1‑90 (MQ=12)

                                                                                    aTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc  <  2:1452544/90‑1 (MQ=31)

TTTAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAC  >  AC_000091/4056131‑4056304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.