| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 4056987 | NA (NA) | 125 (0.930) | 88/178 | 0.3 | 89.3% | coding (388/414 nt) | yrhA | hypothetical protein |
| ? | AC_000091 | = 4370795 | 15 (0.110) | coding (471/1116 nt) | dcuA | C4‑dicarboxylate antiporter | |||||
Only 100 of 289 total aligned reads displayed.
CCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGAGTTGAA > AC_000091/4370706‑4370884 | ctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttg < 2:1062628‑M2/9‑1 (MQ=255) tcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttga < 1:1647652‑M2/10‑1 (MQ=255) tcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttga < 2:861088‑M2/10‑1 (MQ=255) ccATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGg < 1:2487734‑M2/90‑2 (MQ=255) ccATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGg > 1:2137702‑M2/1‑89 (MQ=255) aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttgatt < 1:2910173‑M2/12‑1 (MQ=255) aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttgatt < 1:2801527‑M2/12‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttgattt < 1:365965‑M2/13‑1 (MQ=255) cTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgat > 2:2064079‑M2/1‑84 (MQ=255) gggCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgct < 1:1423934‑M2/90‑10 (MQ=255) gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCt < 2:142874‑M2/22‑1 (MQ=255) gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCt < 1:480701‑M2/22‑1 (MQ=255) gTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaa < 1:535539‑M2/90‑15 (MQ=255) ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaac > 2:1756295‑M2/1‑75 (MQ=255) tgatgaTTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaact > 1:1591035‑M2/1‑74 (MQ=255) ctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCtttt < 1:778439‑M2/25‑1 (MQ=255) ctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCtttt < 2:1198064‑M2/25‑1 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTc < 1:1965067‑M2/26‑1 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTc > 1:801256‑M2/65‑90 (MQ=255) atgatTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaactta > 2:3432832‑M2/1‑72 (MQ=255) gatTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttact < 1:1340562‑M2/90‑21 (MQ=255) gatTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttact > 2:2654974‑M2/1‑70 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCAcc < 2:3352804‑M2/29‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCAcc < 1:2558134‑M2/29‑1 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACcgcg > 1:851615‑M2/59‑90 (MQ=255) caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCgcgc < 1:2420403‑M2/33‑1 (MQ=255) cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgattt < 2:2436644‑M2/90‑26 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCa < 2:3460112‑M2/34‑1 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAg < 1:254162‑M2/35‑1 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAg > 2:593044‑M2/56‑90 (MQ=255) aTAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgattta > 1:727972‑M2/1‑64 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGtt > 1:209030‑M2/54‑90 (MQ=255) tcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTc > 1:2348444‑M2/53‑90 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCaa > 2:3046313‑M2/51‑90 (MQ=255) aaCCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtat < 2:2959888‑M2/90‑33 (MQ=255) aaCCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtat > 2:2302045‑M2/1‑58 (MQ=255) cgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAAcc > 1:3068648‑M2/49‑90 (MQ=255) cgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAAcc > 2:1481954‑M2/49‑90 (MQ=255) aCCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatg > 1:748104‑M2/1‑57 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAg < 1:1538813‑M2/44‑1 (MQ=255) cACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgat < 1:2995792‑M2/90‑36 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGc > 1:2714666‑M2/45‑90 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGc < 2:517037‑M2/46‑1 (MQ=255) cGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatgg > 2:1239290‑M2/1‑53 (MQ=255) gCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggt < 1:1007118‑M2/90‑39 (MQ=255) aaCTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtt < 1:2225286‑M2/90‑42 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCctct > 1:1128526‑M2/40‑90 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCctct > 2:911236‑M2/40‑90 (MQ=255) aCTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgttt > 1:1743491‑M2/1‑48 (MQ=255) ctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCtt < 2:410219‑M2/52‑1 (MQ=255) cTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttt < 1:3395738‑M2/90‑44 (MQ=255) gaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTcc < 2:801226‑M2/54‑1 (MQ=255) ataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGAc < 1:2659667‑M2/58‑1 (MQ=255) taaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACg > 1:128597‑M2/32‑90 (MQ=255) cagcagGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg < 1:2287749‑M2/90‑51 (MQ=255) agcagGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc > 1:3435061‑M2/1‑39 (MQ=255) aaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGc > 1:1235605‑M2/31‑90 (MQ=255) cagGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc < 1:1880048‑M2/90‑54 (MQ=255) aacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCtt < 2:3282144‑M2/62‑1 (MQ=255) agGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:1839620‑M2/1‑36 (MQ=255) cactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGc > 2:2997901‑M2/27‑90 (MQ=255) gAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag < 2:1255133‑M2/90‑57 (MQ=255) actatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCg > 2:1973409‑M2/26‑90 (MQ=255) actatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCg > 2:1852536‑M2/26‑90 (MQ=255) tatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGAt > 2:1591455‑M2/24‑90 (MQ=255) aCAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg > 2:1543110‑M2/1‑32 (MQ=255) aGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 2:2547587‑M2/90‑61 (MQ=255) gCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 2:2004610‑M2/1‑29 (MQ=255) aataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAAt > 2:2791999‑M2/20‑90 (MQ=255) cAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:3013167‑M2/90‑64 (MQ=255) ataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATc < 1:3330666‑M2/72‑1 (MQ=255) taagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCg < 1:1304738‑M2/73‑1 (MQ=255) aGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct < 2:1701231‑M2/90‑65 (MQ=255) aGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct > 1:3267055‑M2/1‑26 (MQ=255) gacggacgTTTTTGCACCGGATTTGtgtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg > 1:2017509‑M2/1‑25 (MQ=255) gacggacgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagttgctccagtggcttttt < 2:3221651‑M2/90‑66 (MQ=255) gacggacgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg > 2:527991‑M2/1‑25 (MQ=255) ttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATc < 1:2599773‑M2/77‑1 (MQ=255) ggacgTTTTTGCACCGGATTTGggtgatgctgccaacttactgagttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt < 1:2192663‑M2/90‑69 (MQ=255) ggcgttTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc > 2:1913611‑M2/3‑21 (MQ=255) ggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGt < 1:3102230‑M2/79‑1 (MQ=255) cgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 1:1055020‑M2/90‑72 (MQ=255) cgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 2:2834360‑M2/90‑72 (MQ=255) cgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 2:2194178‑M2/90‑72 (MQ=255) gtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCag > 2:2599844‑M2/9‑90 (MQ=255) ttttGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca > 1:1712837‑M2/1‑16 (MQ=255) attacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCagaga > 2:3147985‑M2/6‑90 (MQ=255) attacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGGTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATAGGTTCGTCagaga > 2:1506347‑M2/6‑90 (MQ=255) cACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt > 2:1130119‑M2/1‑11 (MQ=255) cACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt > 2:128193‑M2/1‑11 (MQ=255) acCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGtt > 1:1416742‑M2/3‑90 (MQ=255) cCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGttt < 2:731475‑M2/89‑1 (MQ=255) ggATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct > 2:2362774‑M2/1‑7 (MQ=255) ggATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGa > 1:971204/1‑90 (MQ=255) ggATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGa < 1:2379821/90‑1 (MQ=255) tttgatttCAATCTGCTTTTCACCGCGCAGTTAAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCTGAGAGTTTGGAGtt > 2:1649127/1‑90 (MQ=255) ttgatttCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGAGTTg < 2:1082817/90‑1 (MQ=255) ttgatttCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGAGTTg < 1:3189272/90‑1 (MQ=255) gatttCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGAGTTGaa < 2:2728808/90‑1 (MQ=255) gatttCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGACAGAGAGTTTGGTGATGaa > 2:3110603/1‑90 (MQ=255) | CCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTGGAGTTGAA > AC_000091/4370706‑4370884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |