mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,240,108 | 0 | T | G | 56.2% | 2.1 / 14.0 | 16 | A47A (GCA→GCC) | cirA | catecholate siderophore receptor CirA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 281585 = | 59 (2.770) | 5 (0.260) | 4/152 | 1.2 | 9.3% | coding (480/1383 nt) | yagG | MFS transporter |
| ? | NZ_CP009273 | 281607 = | 44 (2.280) | coding (502/1383 nt) | yagG | MFS transporter | |||||
| * | ? | NZ_CP009273 | 3920778 = | 35 (1.640) | 4 (0.220) | 3/144 | 1.4 | 11.6% | coding (264/993 nt) | asnA | aspartate‑‑ammonia ligase |
| ? | NZ_CP009273 | 3920817 = | 31 (1.700) | coding (303/993 nt) | asnA | aspartate‑‑ammonia ligase | |||||