| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,500 | Δ4 bp | coding (124‑127/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613500 | 1613503 | 4 | 51 [0] | [0] 53 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613499 | 0 (0.000) | 51 (1.640) | 31/160 | 0.1 | 100% | coding (123/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613504 = | 0 (0.000) | coding (128/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
ATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1613410‑1613499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACC > NZ_CP009273/1613504‑1613592 ATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAT < 2:417587/91‑1ATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAT < 1:398387/91‑1 ATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGG > 1:1019357/1‑91 ATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGG < 2:842826/91‑1 ATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGG < 2:646289/91‑1 ATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGG < 2:574053/91‑1 ATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGG < 2:1019357/91‑1 GGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCCCGGCATTAAGGTGC < 1:1008707/91‑1 GTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTC < 2:603094/91‑1 GCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGC > 1:646970/1‑91 GTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGC > 1:695293/1‑91 TTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCG > 1:708303/1‑91 TAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTTGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGG < 2:820316/91‑1 ATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCG < 2:328517/91‑1 AGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGT < 2:695293/91‑1 AGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCG > 1:555093/1‑85 AGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCG < 2:555093/85‑1 AGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGG > 1:448802/1‑83 AGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGG < 2:448802/83‑1 AGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTC < 2:231892/91‑1 CGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGT > 2:772613/1‑91 CGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGT > 1:615324/1‑91 CGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGG < 1:707350/75‑1 CGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGG > 2:707350/1‑75 CCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCA‑TAAGGTGCTCTGCTCTATCCGCTGCGCGG < 2:56864/72‑1 CCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCA‑TAAGGTGCTCTGCTCTATCCGCTGCGCGG > 1:56864/1‑72 GCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAAC > 1:174046/1‑91 GTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGG > 1:386205/1‑91 GTATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGG > 1:749058/1‑91 TATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGC > 2:1036406/1‑58 TATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGC < 1:1036406/58‑1 TATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTC > 1:443602/1‑41 TATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTC < 2:443602/41‑1 TATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTC > 1:789816/1‑41 TATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTC < 2:789816/41‑1 ATCTGTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTA > 1:491819/1‑91 GTCTCCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGT > 1:1045590/1‑91 CCGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGT > 1:613790/1‑91 CGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTC < 2:213157/91‑1 CGCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTC < 1:30851/91‑1 GCTGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCG > 1:684215/1‑91 TGGATATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGAC < 2:615324/91‑1 ATTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGG < 2:684215/91‑1 TTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGA > 2:657479/1‑91 TTACCGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGA > 2:916826/1‑91 CGCGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCAC < 1:403540/91‑1 CGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTG < 2:661857/91‑1 CGGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTG < 1:916826/91‑1 GGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTC > 2:933092/1‑75 GGCATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTC < 1:933092/75‑1 CATTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACC < 1:690175/91‑1 ATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1613410‑1613499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACC > NZ_CP009273/1613504‑1613592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |