| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3572747 | 110 (1.840) | 3 (0.060) | 3/144 | 3.6 | 3.2% | coding (259/696 nt) | yhhW | quercetin 2,3‑dioxygenase |
| ? | NZ_CP009273 | = 3572830 | 84 (1.600) | coding (176/696 nt) | yhhW | quercetin 2,3‑dioxygenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACCCGCCGGAACCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCGGATCG > NZ_CP009273/3572741‑3572916 | cACCCGCCGGAACCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTAt > 1:1443202/1‑90 (MQ=255) cccGCCGGAACCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGc < 1:1032860/90‑1 (MQ=255) cccGCCGGAACCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGc < 1:691738/90‑1 (MQ=255) ggAACCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGa < 2:1443202/90‑1 (MQ=255) aaCCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGt < 2:1501295/90‑1 (MQ=255) cttctctTTATTGCCCATGCTTTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGcc < 2:298732/87‑1 (MQ=255) cTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGcc > 2:1687018/1‑90 (MQ=255) tGCTCTTTATTGCCCATGCTGTCCTGATGATCAACAGTACATTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCg > 1:1674188/1‑90 (MQ=255) gCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGa < 2:601691/90‑1 (MQ=255) gCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGa > 2:1376742/1‑90 (MQ=255) gCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGa > 1:401417/1‑90 (MQ=255) ctctTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGaa < 2:1307874/90‑1 (MQ=255) ctTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgc < 1:1578807/90‑1 (MQ=255) tttATTTCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgcc > 2:362851/1‑90 (MQ=255) ttATTGCCCATGCTGTCCTGATGATCAACAGTACATTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccc < 2:1674188/90‑1 (MQ=255) tGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccctgcc < 1:1629019/90‑1 (MQ=255) gCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccctgccc < 2:796971/90‑1 (MQ=255) cATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGc < 1:1197974/64‑1 (MQ=255) cATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGc > 2:389426/1‑64 (MQ=255) cATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGc > 2:1197974/1‑64 (MQ=255) cATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCcctgccctgc > 2:1448765/1‑90 (MQ=255) cATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCcctgccctgc > 2:1377440/1‑90 (MQ=255) cATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGACAAAATTTCCATATCTTTATGc < 1:389426/64‑1 (MQ=255) tGCTGTCCTGATTCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCtt < 1:301413/90‑1 (MQ=255) tGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCtt > 1:445351/1‑90 (MQ=255) tGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCtt > 1:1730661/1‑90 (MQ=255) gTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccc > 2:1413112/1‑76 (MQ=255) gTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccc < 1:1413112/76‑1 (MQ=255) gTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccc < 1:1191947/76‑1 (MQ=255) gTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccc > 2:1191947/1‑76 (MQ=255) tCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATc < 1:1045516/90‑1 (MQ=255) tCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATc > 2:564815/1‑90 (MQ=255) ccTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCa > 1:212436/1‑90 (MQ=255) gATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgt < 2:1490308/90‑1 (MQ=255) gATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgt > 1:1294553/1‑90 (MQ=255) gATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgt > 1:396684/1‑90 (MQ=255) gATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgt < 2:1199968/90‑1 (MQ=255) gATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgt < 1:1056136/90‑1 (MQ=255) gATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgt < 1:1278060/90‑1 (MQ=255) aTGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgtc < 2:162007/90‑1 (MQ=255) aTGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgtc < 2:145375/90‑1 (MQ=255) gCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgtcgt > 1:678242/1‑90 (MQ=255) tCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAcgtcgtcg > 2:1133738/1‑90 (MQ=255) tCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGCGAGGGCCGAAGCCCTGCCCTGCTTCAATCAcgtcgtcg > 2:1766446/1‑90 (MQ=255) aaCAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGa < 1:1788606/52‑1 (MQ=255) aaCAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGa > 2:1788606/1‑52 (MQ=255) aCAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATTCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTa > 1:1262890/1‑90 (MQ=255) aGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAAt > 2:1253976/1‑90 (MQ=255) tACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCa > 2:1514106/1‑90 (MQ=255) aCCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGAGTGAGTGCCGAAGGCCTGCCCTGCTTCAATCACGTCGTCGTTAATCAc > 2:1503421/1‑90 (MQ=255) aCCTTCCAGCACGTAGGTCAAAAATTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCAc > 2:57495/1‑90 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTg > 1:586490/1‑42 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTg < 2:586490/42‑1 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAc < 2:86087/72‑1 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCAc > 1:86087/1‑72 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCAcgcg > 1:1360996/1‑90 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCAcgcg > 2:273979/1‑90 (MQ=255) ttCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCAcgcg > 1:869388/1‑90 (MQ=255) tCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACgcgc < 2:1021042/90‑1 (MQ=255) ccAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCa > 2:748544/1‑90 (MQ=255) ccAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGACCTGCCCTGCTTCAATCACGTCGTCGtt < 2:601932/79‑1 (MQ=255) ccAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGACCTGCCCTGCTTCAATCACGTCGTCGtt > 1:601932/1‑79 (MQ=255) cAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccctgccc < 1:1003667/57‑1 (MQ=255) cAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAgccctgccc > 2:1003667/1‑57 (MQ=255) gCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAgcg < 1:1448765/90‑1 (MQ=255) gCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAccg > 2:491408/1‑90 (MQ=255) aCGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGtt > 2:1376703/1‑74 (MQ=255) aCGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGtt < 1:1376703/74‑1 (MQ=255) cGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCgg < 1:806610/90‑1 (MQ=255) tAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGa > 2:764852/1‑40 (MQ=255) tAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGa < 1:764852/40‑1 (MQ=255) tAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGgag < 2:812674/90‑1 (MQ=255) tAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGgag > 2:1388997/1‑90 (MQ=255) aGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCTAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGgaga > 1:1156273/1‑90 (MQ=255) aGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGgaga < 1:80254/90‑1 (MQ=255) aGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGgaga > 1:894134/1‑90 (MQ=255) ggTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCATGTCGTCGTTAATCACGCGCAGCGCGGAGaa > 1:172307/1‑90 (MQ=255) ggTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGaa < 1:748544/90‑1 (MQ=255) aatCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGaa < 2:813932/88‑1 (MQ=255) aaaTTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGcc < 2:1288467/88‑1 (MQ=255) aaaTTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGcc > 1:1288467/1‑88 (MQ=255) tttCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATaa < 1:1388997/90‑1 (MQ=255) tCCATATCTTTATGCGGGTGAGTTCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAg > 1:226086/1‑90 (MQ=255) tCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAg > 2:224761/1‑90 (MQ=255) tCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAg > 2:1682707/1‑90 (MQ=255) tCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAg > 2:832545/1‑90 (MQ=255) tCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGAGCAGCGCGGAGAAGCCCATAAAg > 1:1522108/1‑90 (MQ=255) atatCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGAGCAGCGCGGAGAAGCCCATAAAGTTc < 2:1522108/90‑1 (MQ=255) atatCTTTATGCGGGTGAGGGCCGAAGCCCCGCCCTGCTTCAATCACGTCGTCGTTAATCACGACCAGCGCGGAGAAGCCCATAAAGTTc < 2:162837/90‑1 (MQ=255) atCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCgg < 2:346431/90‑1 (MQ=255) atCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCgg < 2:401417/90‑1 (MQ=255) atCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCgg < 1:1687018/90‑1 (MQ=255) atCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCgg < 1:1066526/90‑1 (MQ=255) tCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCGGa > 1:1344324/1‑90 (MQ=255) tCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCGGa < 1:1261153/90‑1 (MQ=255) ttATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCGGATCg > 2:344014/1‑90 (MQ=255) ttATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCGGATCg > 1:494014/1‑90 (MQ=255) | CACCCGCCGGAACCTGCTCTTTATTGCCCATGCTGTCCTGATGCTCAACAGTACCTTCCAGCACGTAGGTCAAAATTTCCATATCTTTATGCGGGTGAGTGCCGAAGCCCTGCCCTGCTTCAATCACGTCGTCGTTAATCACGCGCAGCGCGGAGAAGCCCATAAAGTTCGGATCG > NZ_CP009273/3572741‑3572916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |