| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4267798 | 7 (0.300) | 17 (0.720) +CCG |
15/154 | 0.3 | 71.2% | coding (402/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR |
| ? | NZ_CP009273 | 4267799 = | 7 (0.290) | coding (403/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR | |||||
TTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/4267721‑4267798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTG > NZ_CP009273/4267799‑4267886 ||| TTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGAC < 2:722406/90‑1 TAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGTCGGGCGACC < 1:354598/90‑1 AGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCG > 2:533319/1‑90 TGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCT > 1:312323/1‑90 GGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTT < 2:165208/90‑1 GCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTA > 1:48165/1‑90 GCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGG < 2:87231/90‑1 GTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAG < 1:602068/90‑1 ATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCT < 1:574597/88‑1 ATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCT > 2:574597/1‑88 TTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGA > 1:242665/1‑90 TTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGA > 2:197717/1‑90 TTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGA > 1:303208/1‑90 TGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAA > 2:639238/1‑90 TGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGA > 1:684759/1‑90 GCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAAC < 2:684759/90‑1 AGTGATTGCCCGTTGCGTAACCCGCCGGGCGACCGCTTAGG‑‑‑AGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCC > 2:122038/1‑90 CGCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTG > 1:124220/1‑90 ||| TTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/4267721‑4267798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTG > NZ_CP009273/4267799‑4267886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |