| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4267798 | 7 (0.300) | 17 (0.720) +CCG |
15/154 | 0.3 | 71.2% | coding (402/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR |
| ? | NZ_CP009273 | 4267799 = | 7 (0.290) | coding (403/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR | |||||
ATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTT > NZ_CP009273/4267716‑4267888 | aTACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCg < 1:480507/90‑1 (MQ=255) ttagtggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGAc < 2:722406‑M2/9‑1 (MQ=255) tagtggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgTCGGGCGAcc < 1:354598‑M2/10‑1 (MQ=255) agtggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCg > 2:533319‑M2/80‑90 (MQ=255) tggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCt > 1:312323‑M2/78‑90 (MQ=255) ggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCtt < 2:165208‑M2/14‑1 (MQ=255) gcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTa > 1:48165‑M2/76‑90 (MQ=255) gctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAgg < 2:87231‑M2/17‑1 (MQ=255) gcTGCGCGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga > 2:472058/1‑90 (MQ=255) gtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGagaag < 1:602068‑M2/22‑1 (MQ=255) gATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga > 1:311665/1‑70 (MQ=255) gATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga < 2:311665/70‑1 (MQ=255) attggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCt < 1:574597‑M2/40‑1 (MQ=255) attggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCt > 2:574597‑M2/49‑88 (MQ=255) ttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGa > 1:303208‑M2/44‑90 (MQ=255) ttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGa > 2:197717‑M2/44‑90 (MQ=255) ttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGa > 1:242665‑M2/44‑90 (MQ=255) tgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGaa > 2:639238‑M2/43‑90 (MQ=255) tggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGa > 1:684759‑M2/41‑90 (MQ=255) ggCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGaa > 1:274753/1‑90 (MQ=255) gcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAAc < 2:684759‑M2/55‑1 (MQ=255) cgcgCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaaa < 1:229823/90‑1 (MQ=255) agtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGG‑‑‑AGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGcc > 2:122038‑M2/25‑90 (MQ=255) ttGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCtt < 2:301032/90‑1 (MQ=255) cgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTg > 1:124220‑M2/3‑90 (MQ=255) ccGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgtttgtt > 2:455585/1‑90 (MQ=255) | ATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTT > NZ_CP009273/4267716‑4267888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |