| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4267798 | 7 (0.300) | 17 (0.720) +CCG |
15/154 | 0.3 | 71.2% | coding (402/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR |
| ? | NZ_CP009273 | 4267799 = | 7 (0.290) | coding (403/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR | |||||
ATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTT > NZ_CP009273/4267716‑4267879 | aTACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCg < 1:480507/90‑1 (MQ=255) ttAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgac < 2:722406‑M1/90‑13 (MQ=255) tAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgtcgggcgacc < 1:354598‑M1/90‑14 (MQ=255) aGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccg > 2:533319‑M1/1‑76 (MQ=255) tGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgct > 1:312323‑M1/1‑74 (MQ=255) ggCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgctt < 2:165208‑M1/90‑18 (MQ=255) gcgcTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgctta > 1:48165‑M1/1‑72 (MQ=255) gcTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttagg < 2:87231‑M1/90‑21 (MQ=255) gcTGCGCGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga > 2:472058/1‑90 (MQ=255) gTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaag < 1:602068‑M1/90‑26 (MQ=255) gATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga > 1:311665/1‑70 (MQ=255) gATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga < 2:311665/70‑1 (MQ=255) aTTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgct > 2:574597‑M1/1‑45 (MQ=255) aTTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgct < 1:574597‑M1/88‑44 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctgga > 1:242665‑M1/1‑40 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctgga > 2:197717‑M1/1‑40 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctgga > 1:303208‑M1/1‑40 (MQ=255) tgtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaa > 2:639238‑M1/1‑39 (MQ=255) tgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaaga > 1:684759‑M1/1‑37 (MQ=255) ggCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGaa > 1:274753/1‑90 (MQ=255) gCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaac < 2:684759‑M1/90‑59 (MQ=255) cgcgCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaaa < 1:229823/90‑1 (MQ=255) aGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaaggtaccggcgcacgcttgctggaagatgaacaaaactaaagcgcc > 2:122038‑M1/1‑21 (MQ=255) ttGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCtt < 2:301032/90‑1 (MQ=255) | ATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTT > NZ_CP009273/4267716‑4267879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |