New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 1903035 | 0 (0.000) | 8 (0.760) | 8/166 | 0.3 | 100% | intergenic (‑12/‑147) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
? | NZ_CP009273 | 2062423 = | NA (NA) | intergenic (+2/+10) | BW25113_RS24005/BW25113_RS10425 | TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase |
TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1902959‑1903035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA > NZ_CP009273/2062423‑2062501 TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT < 1:247125/77‑1 TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT > 2:247125/1‑77 AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATA > 1:203416/1‑84 AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATA < 2:203416/84‑1 AGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATATTTCCAG < 2:234233/90‑1 AAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATATTTCCAGACATCTGTTA < 1:263840/90‑1 CCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAC > 2:134976/1‑90 ACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC < 2:274465/90‑1 ACCCATCGAAACTTTTTCACTCCAATCTCCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTG > 2:51687/1‑90 CCAATCTCCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA < 1:181914/90‑1 TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1902959‑1903035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA > NZ_CP009273/2062423‑2062501 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |