New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1903035	0 (0.000)	8 (0.760)	8/166	0.3	100%	intergenic (‑12/‑147)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein
	?	NZ_CP009273	2062423 =	NA (NA)					intergenic (+2/+10)	BW25113_RS24005/BW25113_RS10425	TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase

GAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCG  >  NZ_CP009273/2062371‑2062483                                                     |                                                             gagaTATCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                         <  1:5427/90‑1 (MQ=255)    aTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc                      <  2:104909/90‑1 (MQ=255)             aaCTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACaa             >  2:166658/1‑90 (MQ=255)                        aGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCg  >  1:79962/1‑90 (MQ=255)                         ggCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGAc                                       >  1:298115/1‑52 (MQ=255)                         ggCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGAc                                       <  2:298115/52‑1 (MQ=255)                         ggCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTAt                              <  1:7603/61‑1 (MQ=255)                         ggCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTAt                              >  2:7603/1‑61 (MQ=255)                                                     |                                                             GAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCG  >  NZ_CP009273/2062371‑2062483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.