New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 1903035 | 0 (0.000) | 8 (0.760) | 8/166 | 0.3 | 100% | intergenic (‑12/‑147) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
? | NZ_CP009273 | 2062423 = | NA (NA) | intergenic (+2/+10) | BW25113_RS24005/BW25113_RS10425 | TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase |
TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAAT > NZ_CP009273/1902959‑1903116 | tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT < 1:247125‑M1/77‑1 (MQ=255) tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGGAACTTTTTCACTCCAATCTCCGT > 2:247125‑M1/1‑77 (MQ=255) tagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCAtt < 1:241310‑M1/26‑1 (MQ=255) aaGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctata > 1:203416‑M1/1‑69 (MQ=255) aaGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctata < 2:203416‑M1/84‑16 (MQ=255) gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTaa < 2:286475‑M1/28‑1 (MQ=255) agcagcAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccag < 2:234233‑M1/90‑23 (MQ=255) aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAg < 1:277322‑M1/33‑1 (MQ=255) agactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGc > 1:164494‑M1/57‑90 (MQ=255) gactatcacttatttaagtgatattggttgtctggagattcagggggccagcctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCa < 2:189801‑M1/35‑1 (MQ=255) ctatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATg < 2:163793‑M1/37‑1 (MQ=255) aagcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgtta < 1:263840‑M1/90‑33 (MQ=255) ccacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaac > 2:134976‑M1/1‑49 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaaccc < 2:274465‑M1/90‑44 (MQ=255) ttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTAt < 2:34616‑M1/62‑1 (MQ=255) gtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGt < 1:278143‑M1/64‑1 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg > 2:51687‑M1/1‑32 (MQ=255) ccAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcga < 1:181914‑M1/90‑80 (MQ=255) ctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAAt > 2:46594‑M1/4‑90 (MQ=255) | TGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAAT > NZ_CP009273/1902959‑1903116 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |