| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 174 (1.470) | 66/170 | 0.1 | 86.6% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | 3512441 = | 27 (0.230) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
Only 100 of 174 total aligned reads displayed.
TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19884‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTG > NZ_CP009273/3512441‑3512529 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:2752094/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:1253535/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:1539115/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:3227242/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:1909454/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:1855317/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAC < 2:1334494/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAC < 2:612132/90‑1 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATT < 2:1833474/90‑1 CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTC < 1:2314952/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA < 2:1164722/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA < 2:2190685/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA < 2:275883/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA < 1:1209269/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGATGGAGTCATTACCGACTATTCGTTA > 2:49472/1‑90 AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAA < 2:1964810/90‑1 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATA > 2:3297794/1‑90 AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACC < 1:2101715/90‑1 CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCG < 1:2704206/90‑1 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:3021787/1‑65 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:3021787/65‑1 CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTT < 1:3252869/90‑1 CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTT > 1:145326/1‑90 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTC > 1:738961/1‑90 CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTC < 1:93257/90‑1 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAG > 2:2124798/1‑90 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:655192/1‑55 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:655192/55‑1 ATCTGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGC < 2:2396868/90‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGC < 1:3328820/90‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGC < 1:54346/90‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGC > 2:1744975/1‑90 TCGGGCATTATCTGAACATAAAACACTATCATTAAGTTGAAGTCATTACCGACTATTCGTTAATGATAAACCCACTTCGCTCAGAGAGCG > 2:249487/1‑90 CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCA < 2:2595649/90‑1 CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCA < 1:1966766/90‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAG > 2:2513778/1‑90 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATG < 2:3066903/90‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGA > 1:1021637/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGA > 1:2678548/1‑90 TAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA < 1:3161531/44‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA > 2:3161531/1‑44 TAAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTA > 2:746723/1‑44 AAAACCCTATCAATAAGTTGGGGGCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAA < 2:2777833/90‑1 AAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAA < 1:1555939/90‑1 AAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAA < 1:1453188/90‑1 AAAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAA < 2:133043/90‑1 AAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAA > 1:1199807/1‑90 AAACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCA < 2:1129165/75‑1 AAACACTATCAAT‑AGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC > 1:1293165/1‑90 AACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 2:2572517/90‑1 AACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 2:2836765/90‑1 AACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 2:943103/90‑1 AACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 1:2860396/90‑1 AACACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 1:368510/90‑1 CACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCT > 1:1054679/1‑90 CACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCT > 1:789709/1‑90 CACTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGC > 2:311823/1‑66 CTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCA > 2:884052/1‑90 CTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCA > 2:796687/1‑90 CTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCA < 2:1921776/90‑1 CTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCA > 2:2070586/1‑90 CTATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCA > 2:406223/1‑90 TATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCAT > 2:2618884/1‑90 ATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATA < 2:1685512/90‑1 ATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATA < 2:789709/90‑1 ATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATA > 1:1094560/1‑90 ATCAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATA < 2:1054679/90‑1 CAATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAG < 1:2618884/90‑1 AATAAGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAACGCCGCAGGACATGAACTGAAACCTCATAAGA > 2:552661/1‑90 AGTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACCGAAACCTCATAAGATATT > 1:2482959/1‑90 GTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTG > 1:2791035/1‑90 GTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTG > 2:2914728/1‑90 GTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCT < 1:691096/41‑1 GTTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCT > 2:691096/1‑41 TTGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGC > 2:1260118/1‑90 TGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCG > 2:661502/1‑90 TGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCG > 1:841990/1‑90 TGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCG > 1:2354176/1‑90 TGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCC > 1:2173556/1‑55 TGGAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCC < 2:2173556/55‑1 GAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAG > 1:328568/1‑90 GAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAG > 1:952418/1‑90 GAGTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAG > 1:2080125/1‑90 GTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAG > 1:3137990/1‑90 GTCATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAG > 1:2791636/1‑90 cCATTACCGACTATTCGTTAATGATAACCCCCCTTCGCTCCGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGT < 1:3048958/89‑1 CATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTC < 2:1929875/90‑1 CATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTC < 1:1706844/90‑1 CATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTC < 1:1803421/90‑1 CATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 1:2594963/68‑1 ATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCA > 2:3402470/1‑90 ATTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCA < 2:145326/90‑1 TTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAG > 1:3227645/1‑90 TTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAG > 1:345402/1‑90 TTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAG > 1:756860/1‑90 TTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC < 1:2457356/66‑1 TTACCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAC > 2:2457356/1‑66 CCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACT < 2:2678548/90‑1 CCGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCG > 1:3066954/1‑42 CGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTG > 2:2631793/1‑90 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19884‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTG > NZ_CP009273/3512441‑3512529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |