| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 174 (1.470) | 66/170 | 0.1 | 86.6% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | 3512441 = | 27 (0.230) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
Only 100 of 322 total aligned reads displayed.
TAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGA > NZ_CP009273/3512352‑3512530 | tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 1:1253535‑M2/1‑1 (MQ=255)tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 2:3227242‑M2/1‑1 (MQ=255) tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAc > 2:713948‑M2/88‑90 (MQ=255) tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAc < 2:2829142‑M2/3‑1 (MQ=255) aCTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGAc < 1:3317497/90‑1 (MQ=255) tctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTAtt < 2:1833474‑M2/7‑1 (MQ=255) gcgcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTAtt < 2:2718214/90‑1 (MQ=255) gcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCg > 2:1304651/1‑90 (MQ=255) cAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggt < 2:2027872‑M1/90‑4 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTa < 2:1164722‑M2/12‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTa < 2:2152227‑M2/12‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagatggagtcattaccGACTATTCGTTa > 2:49472‑M2/79‑90 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTaa < 2:2772351‑M2/13‑1 (MQ=255) gTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgc < 1:3231842‑M1/90‑9 (MQ=255) tGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgct < 1:3139823‑M1/90‑10 (MQ=255) gtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATa > 2:3297794‑M2/73‑90 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATaaa > 2:934201‑M2/71‑90 (MQ=255) agctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAAcc < 1:2101715‑M2/22‑1 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 2:3021787‑M2/1‑1 (MQ=255) ccGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaactt < 1:2056426‑M1/90‑18 (MQ=255) ggCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttac < 1:977296‑M1/90‑20 (MQ=255) cccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTTCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgat < 1:3104926‑M1/90‑24 (MQ=255) caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTc < 1:93257‑M2/32‑1 (MQ=255) ccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatt < 1:2776062‑M1/90‑25 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAATACTATTCGggtgatgctgccaacttactgattt < 2:396645‑M1/90‑26 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgattt < 1:563110‑M1/90‑26 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgattt < 1:3335684‑M1/90‑26 (MQ=255) tAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCTGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttag < 1:2134796‑M1/90‑28 (MQ=255) tAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttag < 1:475363‑M1/90‑28 (MQ=255) tAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttag < 1:2994722‑M1/90‑28 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg > 1:655192‑M2/55‑55 (MQ=255) ggCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtg < 1:1768523‑M1/90‑30 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc > 2:1744975‑M2/52‑90 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc < 1:54346‑M2/39‑1 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatg > 2:2263717‑M1/1‑57 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatg > 2:870868‑M1/1‑57 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatga > 1:1917266‑M1/1‑56 (MQ=255) aCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgat > 1:225289‑M1/1‑55 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 2:2595649‑M2/45‑1 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 1:1966766‑M2/45‑1 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 2:59153‑M2/45‑1 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAg > 2:2513778‑M2/45‑90 (MQ=255) aGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggt < 1:1510657‑M1/90‑39 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAg < 1:1692409/43‑1 (MQ=255) tgaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg < 2:3066903‑M2/52‑1 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGa > 1:1021637‑M2/38‑90 (MQ=255) atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga > 1:355449‑M1/1‑44 (MQ=255) acataaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAAc > 1:1085051‑M2/36‑90 (MQ=255) taaaacactatcaataagttggagtcattaccGACTATTCGTTa < 1:746723‑M2/12‑1 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaactt < 1:2972059‑M1/58‑18 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaactt > 2:2972059‑M1/1‑41 (MQ=255) aaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 1:1859972‑M2/59‑1 (MQ=255) aaaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 1:1555939‑M2/59‑1 (MQ=255) aaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaaa > 1:1199807‑M2/31‑90 (MQ=255) aaacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaaa < 2:369515‑M2/60‑1 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 2:831523‑M2/61‑1 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:2860396‑M2/61‑1 (MQ=255) aacactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 2:2572517‑M2/61‑1 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 1:683409‑M1/1‑37 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttac > 2:339885‑M1/1‑37 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttac > 2:2338749‑M1/1‑37 (MQ=255) tctcTGCCATTTTTTCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:838205‑M1/1‑36 (MQ=255) cactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc > 2:311823‑M2/28‑66 (MQ=255) cactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCt > 1:789709‑M2/28‑90 (MQ=255) cactatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCt > 1:1054679‑M2/28‑90 (MQ=255) ctatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 2:673479‑M2/61‑1 (MQ=255) ctatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCa > 2:2070586‑M2/26‑90 (MQ=255) tatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCAt > 2:1491603‑M2/25‑90 (MQ=255) tatcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCAt > 2:2618884‑M2/25‑90 (MQ=255) atcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCGGGACATGAACTGAAACCTCATa > 2:1994527‑M2/24‑90 (MQ=255) atcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATa < 2:1685512‑M2/67‑1 (MQ=255) atcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATa < 2:1054679‑M2/67‑1 (MQ=255) tcaataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATaa < 1:2703387‑M2/68‑1 (MQ=255) caataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAg < 1:2618884‑M2/69‑1 (MQ=255) caataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAg < 2:78533‑M2/69‑1 (MQ=255) aataagttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAACGCCGCAGGACATGAACTGAAACCTCATAAGa > 2:552661‑M2/21‑90 (MQ=255) ttttttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:245330‑M1/90‑64 (MQ=255) tttttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct > 1:401949‑M1/1‑26 (MQ=255) agttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACCGAAACCTCATAAGATAtt > 1:2482959‑M2/17‑90 (MQ=255) tttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 2:2194257‑M1/90‑67 (MQ=255) tttCGGTACTACTAAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 1:722675‑M1/90‑67 (MQ=255) gttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTg > 2:2914728‑M2/16‑90 (MQ=255) ttggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGc > 2:1260118‑M2/15‑90 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGcgcc < 2:2173556‑M2/42‑1 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg < 1:3039254‑M2/77‑1 (MQ=255) tggagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg > 1:2354176‑M2/14‑90 (MQ=255) gagtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCgag > 1:328568‑M2/12‑90 (MQ=255) gtcattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGagag > 1:2791636‑M2/10‑90 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:2594963‑M2/61‑1 (MQ=255) cattaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTc < 2:1929875‑M2/83‑1 (MQ=255) ttaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc > 2:2457356‑M2/6‑66 (MQ=255) ttaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCt > 1:1389034‑M2/6‑68 (MQ=255) ttaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCt < 2:1389034‑M2/63‑1 (MQ=255) ttaccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAg > 2:3156925‑M2/6‑90 (MQ=255) actaAGACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc > 1:3176132‑M1/1‑14 (MQ=255) ccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACt < 2:2678548‑M2/88‑1 (MQ=255) ccGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACt < 1:2315427‑M2/88‑1 (MQ=255) cGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTg > 2:643239‑M2/2‑90 (MQ=255) gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc > 1:848461‑M1/1‑9 (MQ=255) gACTATTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:3129555‑M1/1‑9 (MQ=255) | TAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGA > NZ_CP009273/3512352‑3512530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |