BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	19796 =	NA (NA)	174 (1.470)	66/170	0.1	86.6%	intergenic (‑1/+15)	BW25113_RS25960/BW25113_RS00100	fimbrial family protein/IS1‑like element IS1A family transposase
*	?	NZ_CP009273	3512441 =	27 (0.230)	174 (1.470)	66/170	0.1	86.6%	intergenic (‑18/+383)	aroK/hofQ	shikimate kinase AroK/DNA uptake porin HofQ

Only 100 of 119 total aligned reads displayed.

GAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACA  >  NZ_CP009273/19707‑19884

gagaCATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTg                                                                                          <  2:3397119/90‑1 (MQ=255)

      ttGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATg                                                                                    <  1:554296/90‑1 (MQ=255)

      ttGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATg                                                                                    >  1:3056975/1‑90 (MQ=255)

      ttGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATg                                                                                    <  2:395674/90‑1 (MQ=255)

      ttGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATg                                                                                    <  2:1666946/90‑1 (MQ=255)

      ttGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATg                                                                                    <  2:1723601/90‑1 (MQ=255)

       tGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGa                                                                                   >  2:2207996/1‑90 (MQ=255)

       tGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGa                                                                                   >  1:2591488/1‑90 (MQ=255)

          ttCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTc                                                                                <  2:2549230/90‑1 (MQ=255)

          ttCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTc                                                                                <  2:1186433/90‑1 (MQ=255)

            ccATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              <  1:561939/90‑1 (MQ=255)

            ccATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              <  1:391882/90‑1 (MQ=255)

            ccATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              >  2:3407171/1‑90 (MQ=255)

            ccATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              <  1:2399078/90‑1 (MQ=255)

              atatGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAAc                                                                            <  1:2644336/90‑1 (MQ=255)

                atGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACtt                                                                          >  2:1854112/1‑90 (MQ=255)

                atGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACtt                                                                          >  2:2316305/1‑90 (MQ=255)

                 tGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTa                                                                         <  2:628143/90‑1 (MQ=255)

                  gTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAt                                                                        >  1:3264068/1‑90 (MQ=255)

                  gTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAt                                                                        >  2:2183915/1‑90 (MQ=255)

                  gTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAt                                                                        >  2:2452117/1‑90 (MQ=255)

                  gTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGAGGCTGAAACGAGAAGTAATTTCTGGTAATGACTCCAAAttgt                                                                        >  2:2687667/1‑88 (MQ=255)

                   tACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAtt                                                                       <  2:390447/90‑1 (MQ=255)

                    aCGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              <  2:697520/82‑1 (MQ=255)

                    aCGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              >  1:697520/1‑82 (MQ=255)

                    aCGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTg                                                                      >  1:2141109/1‑90 (MQ=255)

                      gcgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGAt                                                                    <  1:152017/90‑1 (MQ=255)

                       cgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATa                                                                   <  1:2472923/90‑1 (MQ=255)

                       cgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATa                                                                   <  2:3022306/90‑1 (MQ=255)

                        gggCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAg                                                                  <  2:1270060/90‑1 (MQ=255)

                        gggCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAg                                                                  >  1:1681483/1‑90 (MQ=255)

                        gggCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAg                                                                  >  1:1737985/1‑90 (MQ=255)

                        gggCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAg                                                                  <  2:3093885/90‑1 (MQ=255)

                        gggCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAg                                                                  >  1:332659/1‑90 (MQ=255)

                          gCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgtg                                                                <  1:2920582/90‑1 (MQ=255)

                          gCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgtg                                                                <  2:2258559/90‑1 (MQ=255)

                          gCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgtg                                                                >  2:1157829/1‑90 (MQ=255)

                          gCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgtg                                                                >  1:2973710/1‑90 (MQ=255)

                          gCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgtg                                                                >  1:2755176/1‑90 (MQ=255)

                            gAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATa                                                                   >  1:790865/1‑85 (MQ=255)

                            gAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATa                                                                   <  2:790865/85‑1 (MQ=255)

                               taaataGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                           <  1:3329923/90‑1 (MQ=255)

                               taaataGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                           <  2:771402/90‑1 (MQ=255)

                                 aataGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                         >  2:2629970/1‑90 (MQ=255)

                                   taGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                       >  2:3275809/1‑90 (MQ=255)

                                   taGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGCAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                       >  1:3289410/1‑90 (MQ=255)

                                    agagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                      <  1:998077/90‑1 (MQ=255)

                                    agagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                      <  2:1061526/90‑1 (MQ=255)

                                     gagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                     >  1:1530204/1‑90 (MQ=255)

                                       ggAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATTACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                   >  1:2168823/1‑90 (MQ=255)

                                       ggAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                   >  1:2386694/1‑90 (MQ=255)

                                       ggAATCTGATCACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                   >  2:2698973/1‑90 (MQ=255)

                                         aaTCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                                                 >  1:1326123/1‑90 (MQ=255)

                                         aaTCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                                                 >  2:2653347/1‑90 (MQ=255)

                                          aTCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATg                                                                                    >  2:2743103/1‑54 (MQ=255)

                                          aTCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                >  2:186573/1‑90 (MQ=255)

                                          aTCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                >  2:2093236/1‑90 (MQ=255)

                                          aTCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                >  1:484630/1‑90 (MQ=255)

                                          aTCTGATTACCTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                >  2:305403/1‑90 (MQ=255)

                                           tCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                               >  2:1082014/1‑90 (MQ=255)

                                              gATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                            >  1:1789537/1‑90 (MQ=255)

                                               aTTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                           >  1:2623135/1‑74 (MQ=255)

                                                  aCTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                        <  2:841705/90‑1 (MQ=255)

                                                  aCTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                        <  1:133327/90‑1 (MQ=255)

                                                  aCTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                        >  1:2198544/1‑90 (MQ=255)

                                                  aCTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                        >  2:1710704/1‑90 (MQ=255)

                                                   cttccttcATGGGGATGCTGAAAAGAGGAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                       >  1:2653997/1‑90 (MQ=255)

                                                     tccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              >  2:1298002/1‑49 (MQ=255)

                                                     tccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCa                                                                              <  1:1298002/49‑1 (MQ=255)

                                                     tccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                        <  2:954089/87‑1 (MQ=255)

                                                     tccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                        >  1:954089/1‑87 (MQ=255)

                                                     tccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                     <  2:2449154/90‑1 (MQ=255)

                                                     tccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                     >  2:3097117/1‑90 (MQ=255)

                                                      ccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                    >  2:1287406/1‑90 (MQ=255)

                                                       cttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                   <  2:560501/90‑1 (MQ=255)

                                                        ttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                  >  2:2321613/1‑90 (MQ=255)

                                                               ggATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                           <  1:2376561/90‑1 (MQ=255)

                                                                 aTGCTGAAAGGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  2:3298696/1‑90 (MQ=255)

                                                                 aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  1:1007125/1‑90 (MQ=255)

                                                                 aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  2:1913770/1‑90 (MQ=255)

                                                                 aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  2:3298698/1‑90 (MQ=255)

                                                                 aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  1:3051912/1‑90 (MQ=255)

                                                                 aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  1:2739473/1‑90 (MQ=255)

                                                                 aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                         >  1:2464442/1‑90 (MQ=255)

                                                                  tGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                        <  2:2247791/90‑1 (MQ=255)

                                                                           gaggagTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATTCAGTTCCACCGAt               >  1:571413/1‑90 (MQ=14)

                                                                             gtagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                      >  1:2142584/1‑49 (MQ=255)

                                                                             gtagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                      <  2:2142584/49‑1 (MQ=255)

                                                                             gtagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt             >  1:1245229/1‑90 (MQ=255)

                                                                                gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                          >  2:374454/1‑74 (MQ=255)

                                                                                gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                          <  1:374454/74‑1 (MQ=255)

                                                                                gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTga          >  1:1405313/1‑90 (MQ=255)

                                                                                     tGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg     >  2:516809/1‑90 (MQ=35)

                                                                                     tGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg     >  1:2175806/1‑90 (MQ=35)

                                                                                     tGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg     >  2:3185249/1‑90 (MQ=35)

                                                                                      gCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGa    <  1:3401817/90‑1 (MQ=33)

                                                                                       cTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                               <  2:2202702/46‑1 (MQ=35)

                                                                                       cTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc   >  1:2687361/1‑90 (MQ=32)

                                                                                       cTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc   >  2:1779654/1‑90 (MQ=32)

                                                                                        tGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACa  >  1:912242/1‑90 (MQ=31)

GAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACA  >  NZ_CP009273/19707‑19884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.