| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 278223 | 179 (1.520) | 11 (0.100) | 8/154 | 4.0 | 5.9% | coding (235/909 nt) | yagE | 2‑keto‑3‑deoxygluconate aldolase |
| ? | NZ_CP009273 | = 278229 | 191 (1.790) | coding (241/909 nt) | yagE | 2‑keto‑3‑deoxygluconate aldolase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/278129‑278223‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgcCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC < NZ_CP009273/278229‑278144 GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC < 1:832414/90‑1GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC > 1:1898581/1‑90GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC > 1:553070/1‑90 GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGGTATCGATCATGTCGATCGTCGCGTGCCG > 2:2609884/1‑90 GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCG > 1:2097743/1‑90 GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCG > 2:2509756/1‑90 GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCG > 1:577366/1‑90 GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCG > 2:2279436/1‑90 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC < 1:1004756/90‑1 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 2:2155205/1‑90 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 1:922093/1‑90 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 2:2216334/1‑90 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 1:404787/1‑90 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 1:2972981/1‑90 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC < 2:3154488/90‑1 GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 2:968915/1‑90 GGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTAGCGATCATGTCGATCGTCGCGTGCCGGTGCGGATC > 2:1988625/1‑90 GCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC > 1:104377/1‑61 GCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC < 2:104377/61‑1 GCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCCCCTGCCGGTGCCGATCAGCACCGGCACGCGACGAT > 2:1347971/1‑90 GCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC > 2:1741600/1‑51 GCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC < 1:1741600/51‑1 AAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAG > 2:1110205/1‑90 ATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAG > 2:2076888/1‑90 TCATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTC > 1:289061/1‑90 TCATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAAGGGCTTTACACTC > 1:468025/1‑90 ATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTT > 2:462719/1‑90 TGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTC < 2:289061/90‑1 TGTCGATCGTCGCGTGCCGGTGCCGACCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTC < 2:468025/90‑1 TCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCC > 1:1733980/1‑90 GTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGG > 2:1691527/1‑90 CCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAG < 1:3366073/90‑1 CGGTGCCGATCAGCACCGGCACGCGACGGTCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGA < 2:3226685/90‑1 GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTTCGCTCTTCGGCGCCGAGCTGGGAGAAC > 2:1519783/1‑90 GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC > 2:3036042/1‑90 GTGCCGACCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC < 1:1194850/90‑1 GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/278129‑278223‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgcCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC < NZ_CP009273/278229‑278144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |