| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 278994 = | 123 (1.040) | 8 (0.070) | 8/154 | 4.0 | 6.6% | coding (83/1968 nt) | yagF | xylonate dehydratase YagF |
| ? | NZ_CP009273 | 279036 = | 115 (1.080) | coding (125/1968 nt) | yagF | xylonate dehydratase YagF | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGAGCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/279090‑278994‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggcaACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGC > NZ_CP009273/279036‑279124 GTGAGCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTC < 1:2466530/90‑1GTGAGCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTC > 2:446522/1‑90GTGAGCTTGTTGGCGTCCCAGCCCATCCCCGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGCGATTCCATCAGCATCTGCGGGGTC < 2:717280/90‑1 TGAGCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCA > 1:2705735/1‑90 GCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCG > 1:288262/1‑90 GCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCG > 2:2403039/1‑90 TTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGC > 1:3211977/1‑90 TTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGC > 2:2815039/1‑90 GTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAA < 1:1730774/90‑1 TGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAACC < 1:205078/90‑1 GCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAACCTGTTCGGCAT < 2:1584558/90‑1 CCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAACCTGTTCGGCATGACGCAG < 1:2253089/90‑1 GCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGA < 2:2926241/90‑1 CGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT < 2:581474/90‑1 AACGGGTTGCCGCGGGGAAATCCCATCAGCATCTGCGGGGTCAGCGGCATCCTGTTCGGCATGACGCAGACCGCCGGGATGGGCTGGGAC < 1:2537297/90‑1 CCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGG < 2:817454/38‑1 CCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGG > 1:817454/1‑38 CATCGGCATCTGCGGGGTGAGCGGCACCCTGTTCGGCATGAGGCAGACCGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGA < 2:1582954/90‑1 CAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCAC > 1:944461/1‑90 CAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCAC < 1:2432007/90‑1 CAGCGGCAACCTCTTCGTCATGACGCAGACCGCCGGGATGGGCTGGGACGCCAACAAGCTAACCGGCAAAGAGGTGCTGATTATCGGCAC < 2:576759/90‑1 GCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTC < 1:555583/90‑1 CGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCA < 1:383296/90‑1 GGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAG > 2:2730368/1‑90 GGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACGCAG > 2:384549/1‑90 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGC > 1:6104/1‑90 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGC > 1:2881278/1‑90 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGC > 1:2273791/1‑90 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGC < 2:1217708/81‑1 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGC > 1:3179194/1‑81 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGC < 2:3179194/81‑1 AACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGC > 1:1217708/1‑81 GTGAGCTTGTTGGCGTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/279090‑278994‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggcaACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGC > NZ_CP009273/279036‑279124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |