New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 278994 =123 (1.040)8 (0.070) 8/154 4.0 6.6% coding (83/1968 nt) yagF xylonate dehydratase YagF
?NZ_CP009273 279036 = 115 (1.080)coding (125/1968 nt) yagF xylonate dehydratase YagF
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 125 total aligned reads displayed.

GATAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAAC  >  NZ_CP009273/278905‑279082
                                                                                         |                                                                                        
gATAACGATGACCATTGAGAAAATTTTCCCCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGctct                                                                                          <  2:723937/90‑1 (MQ=255)
   aaCGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGcc                                                                                       >  2:976152/1‑90 (MQ=255)
      gATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCt                                                                                    >  2:2965742/1‑90 (MQ=255)
       aTGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTg                                                                                   >  2:1694734/1‑90 (MQ=255)
         gACCATTGAGAAAATTTTCACCCCGCAGGATGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAc                                                                                 >  2:3049543/1‑90 (MQ=255)
         gACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGTGCGCAGGGCGCCCTGCCGCTGAc                                                                                 >  2:1472155/1‑90 (MQ=255)
         gACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAc                                                                                 >  2:817149/1‑90 (MQ=255)
          aCCATTGAGAAAATTTTCCCCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                <  2:1556009/90‑1 (MQ=255)
          aCCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                <  1:839031/90‑1 (MQ=255)
          aCCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                <  2:2583633/90‑1 (MQ=255)
          aCCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                <  2:873472/90‑1 (MQ=255)
           ccATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAccc                                                                               >  2:1798134/1‑90 (MQ=255)
           ccATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAccc                                                                               >  2:2173642/1‑90 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            <  1:281899/90‑1 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            >  1:2833322/1‑90 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            >  2:3116811/1‑90 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            <  1:1152281/90‑1 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            >  2:1618911/1‑90 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            >  2:1801949/1‑90 (MQ=255)
              ttGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGc                                                                            <  2:2352111/90‑1 (MQ=255)
               tGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCa                                                                           >  2:500153/1‑90 (MQ=255)
               tGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCa                                                                           >  2:1863561/1‑90 (MQ=255)
               tGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCa                                                                           <  1:796049/90‑1 (MQ=255)
                gagaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAg                                                                          <  1:1295775/90‑1 (MQ=255)
                gagaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAg                                                                          <  1:2668804/90‑1 (MQ=255)
                gagaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAg                                                                          <  1:3334639/90‑1 (MQ=255)
                gagaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAg                                                                          <  2:463176/90‑1 (MQ=255)
                gagaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAg                                                                          <  2:561826/90‑1 (MQ=255)
                 agaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGa                                                                         <  2:1093509/90‑1 (MQ=255)
                  gaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGAt                                                                        <  1:268334/90‑1 (MQ=255)
                  gaAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGAt                                                                        <  1:2324576/90‑1 (MQ=255)
                    aaaTTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGc                                                                      <  2:1906157/90‑1 (MQ=255)
                     aaTTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                >  1:2520049/1‑79 (MQ=255)
                     aaTTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                <  2:2520049/79‑1 (MQ=255)
                     aaTTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCt                                                                     >  2:555583/1‑90 (MQ=255)
                     aaTTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGAAGGGCGCCCTGCCGCTGACCCCGCAgctgct                                                                     >  2:3000470/1‑90 (MQ=255)
                      aTTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTg                                                                    >  2:66091/1‑90 (MQ=255)
                       ttttCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGa                                                                   <  1:1908076/90‑1 (MQ=255)
                        tttCCCCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGAt                                                                  <  2:699324/90‑1 (MQ=255)
                        tttCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGAt                                                                  <  1:3210924/90‑1 (MQ=255)
                                cGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAAtctc                                                          >  1:1433964/1‑90 (MQ=255)
                                  cAGGACGACGCGTTTTATGCGGTGATCCCCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTccc                                                        <  1:1375605/90‑1 (MQ=255)
                                  cAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTccc                                                        <  2:2092106/90‑1 (MQ=255)
                                  cAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTccc                                                        <  2:1433964/90‑1 (MQ=255)
                                    ggACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAg                                                      <  1:145149/90‑1 (MQ=255)
                                    ggACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAg                                                      <  1:229757/90‑1 (MQ=255)
                                    ggACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAg                                                      <  2:2072600/90‑1 (MQ=255)
                                       cgccgcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCgg                                                   <  2:2633179/87‑1 (MQ=255)
                                       cgacgCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCgg                                                   >  1:1586632/1‑90 (MQ=255)
                                       cgacgCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCgg                                                   <  1:1743806/90‑1 (MQ=255)
                                         acgCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCa                                                 >  2:1935004/1‑90 (MQ=255)
                                          cgcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCaa                                                <  2:605491/90‑1 (MQ=255)
                                          cgcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCaa                                                <  1:1064384/90‑1 (MQ=255)
                                            cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                              <  1:797542/90‑1 (MQ=255)
                                            cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                              <  1:1112300/90‑1 (MQ=255)
                                            cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                              <  2:595702/90‑1 (MQ=255)
                                            cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                              <  1:2209344/90‑1 (MQ=255)
                                            cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                              <  1:3325684/90‑1 (MQ=255)
                                            cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                              <  2:1253700/90‑1 (MQ=255)
                                                 tATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTc                                         <  1:556065/90‑1 (MQ=255)
                                                   tGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCgg                                       <  1:342755/90‑1 (MQ=255)
                                                    gCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGc                                      <  2:2974931/90‑1 (MQ=255)
                                                      ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                    <  1:1084188/90‑1 (MQ=255)
                                                      ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                    >  2:724792/1‑90 (MQ=255)
                                                      ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                    <  2:1297435/90‑1 (MQ=255)
                                                      ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                    <  2:2552967/90‑1 (MQ=255)
                                                       gTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATg                                   >  1:2785185/1‑90 (MQ=255)
                                                        tGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGa                                  >  1:2506743/1‑90 (MQ=255)
                                                        tGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGa                                  >  2:3268818/1‑90 (MQ=255)
                                                          aTCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACg                                <  2:2568610/90‑1 (MQ=255)
                                                            cACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCa                              >  1:2404161/1‑90 (MQ=255)
                                                             aCCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAg                             <  1:655634/90‑1 (MQ=255)
                                                             aCCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAg                             <  2:2888075/90‑1 (MQ=255)
                                                                cACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAAc                          <  2:845415/90‑1 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                <  1:526763/35‑1 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGAcc                                                                                >  2:526763/1‑35 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                         >  2:3171318/1‑90 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                         >  1:3267146/1‑90 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                         >  1:1197147/1‑90 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                         >  1:162369/1‑90 (MQ=255)
                                                                 aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                         >  1:2149001/1‑90 (MQ=255)
                                                                  cgcgGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                        <  1:931224/90‑1 (MQ=255)
                                                                  cgcgGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                        <  2:2362471/90‑1 (MQ=255)
                                                                   gcggcgGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAg                                                      <  1:1909176/59‑1 (MQ=255)
                                                                   gcggcgGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGcc                       >  1:1819432/1‑90 (MQ=255)
                                                                   gcggcgGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGcc                       >  2:2701646/1‑90 (MQ=255)
                                                                      gcggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCggg                    >  2:3088579/1‑90 (MQ=255)
                                                                       cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGTCGCAGAACGCCGGGa                   <  1:723457/90‑1 (MQ=255)
                                                                       cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                   <  1:1184852/90‑1 (MQ=255)
                                                                       cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                   <  2:1491754/90‑1 (MQ=255)
                                                                        ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                  <  1:2846290/90‑1 (MQ=255)
                                                                        ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                  >  2:2682071/1‑90 (MQ=255)
                                                                            ccGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTccc                                                        >  2:2412571/1‑48 (MQ=255)
                                                                            ccGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGc              <  2:2710883/90‑1 (MQ=255)
                                                                              gCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTg            <  2:2404161/90‑1 (MQ=255)
                                                                                   gcgcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                   >  1:1304529/1‑78 (MQ=255)
                                                                                   gcgcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                   <  2:1304529/78‑1 (MQ=255)
                                                                                     gcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGAc        <  2:1353986/87‑1 (MQ=255)
                                                                                      ggttGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCca    >  1:205078/4‑90 (MQ=255)
                                                                                        ttGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCcaac  >  1:1730774/2‑90 (MQ=255)
                                                                                         |                                                                                        
GATAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAAC  >  NZ_CP009273/278905‑279082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.