New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 278994 =123 (1.040)8 (0.070) 8/154 4.0 6.6% coding (83/1968 nt) yagF xylonate dehydratase YagF
?NZ_CP009273 279036 = 115 (1.080)coding (125/1968 nt) yagF xylonate dehydratase YagF
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 133 total aligned reads displayed.

CGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCG  >  NZ_CP009273/278947‑279125
                                                                                         |                                                                                         
cgcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCaa                                                                                           <  1:1064384/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  1:3116811/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  1:1112300/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  1:3325684/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  2:595702/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  1:2209344/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  1:839254/90‑1 (MQ=255)
       tATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTc                                                                                    <  1:556065/90‑1 (MQ=255)
          gCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGc                                                                                 <  2:2974931/90‑1 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               <  1:1084188/90‑1 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               <  2:1297435/90‑1 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               <  2:2552967/90‑1 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               >  2:724792/1‑90 (MQ=255)
             gTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATg                                                                              >  2:2598724/1‑90 (MQ=255)
             gTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATg                                                                              >  1:2785185/1‑90 (MQ=255)
              tGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGa                                                                             >  2:3268818/1‑90 (MQ=255)
              tGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGa                                                                             >  1:116870/1‑90 (MQ=255)
              tGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGa                                                                             >  1:2506743/1‑90 (MQ=255)
                  cACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCa                                                                         >  2:3034116/1‑90 (MQ=255)
                  cACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCa                                                                         >  1:2404161/1‑90 (MQ=255)
                   aCCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAg                                                                        <  2:2888075/90‑1 (MQ=255)
                   aCCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAg                                                                        <  1:66091/90‑1 (MQ=255)
                   aCCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAg                                                                        <  1:655634/90‑1 (MQ=255)
                      cACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAAc                                                                     <  2:845415/90‑1 (MQ=255)
                       aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                                                                    >  1:1197147/1‑90 (MQ=255)
                       aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                                                                    >  1:162369/1‑90 (MQ=255)
                       aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                                                                    >  1:2149001/1‑90 (MQ=255)
                        cgcgGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                                                                   <  2:2362471/90‑1 (MQ=255)
                            gcggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCggg                                                               >  2:3088579/1‑90 (MQ=255)
                             cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGTCGCAGAACGCCGGGa                                                              <  1:723457/90‑1 (MQ=255)
                             cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:1491754/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  1:2846290/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  2:791347/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             >  2:2682071/1‑90 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  2:2506743/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  1:2701646/90‑1 (MQ=255)
                              gggcCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  2:1477756/90‑1 (MQ=255)
                                  ccGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGc                                                         <  2:2710883/90‑1 (MQ=255)
                                    gCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTg                                                       <  2:2404161/90‑1 (MQ=255)
                                         gcgcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:1304529/78‑1 (MQ=255)
                                           gcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGAc                                                   >  1:1353986/1‑87 (MQ=255)
                                            ggttGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCca                                               >  1:205078/4‑90 (MQ=255)
                                              ttGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCcaac                                             >  1:1730774/2‑90 (MQ=255)
                                              ctGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCcaac                                             >  2:2782340/1‑90 (MQ=255)
                                                gCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCcaacaa                                           <  1:3211977/90‑1 (MQ=255)
                                                  cGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGc                                         <  2:2403039/90‑1 (MQ=255)
                                                  cGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGc                                         <  1:288262/90‑1 (MQ=255)
                                                     tGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCa                                      <  1:2705735/90‑1 (MQ=255)
                                                      gACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAc                                     <  2:446522/90‑1 (MQ=255)
                                                      gACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAc                                     >  1:2466530/1‑90 (MQ=255)
                                                       aCCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAATCTCAcc                                    <  1:1979633/90‑1 (MQ=255)
                                                       aCCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    <  2:704975/90‑1 (MQ=255)
                                                       aCCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    <  2:1819432/90‑1 (MQ=255)
                                                        ccccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCg                                   >  1:2767783/1‑90 (MQ=255)
                                                        ccccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCg                                   >  2:2589964/1‑90 (MQ=255)
                                                            gCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCaa                               >  1:1421596/1‑90 (MQ=255)
                                                              aGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAag                             <  1:2598724/90‑1 (MQ=255)
                                                              aGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAag                             <  1:48569/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:623062/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:3185468/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:1730774/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:2535912/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:2077840/90‑1 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             >  1:570943/1‑56 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  2:570943/56‑1 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    >  2:291464/1‑81 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    <  1:291464/81‑1 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAagag                           >  1:2919600/1‑90 (MQ=255)
                                                                  gCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGt                         >  1:928254/1‑90 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:1252006/51‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              >  1:1252006/1‑51 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  2:475258/90‑1 (MQ=255)
                                                                     gATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCt                      >  2:146532/1‑90 (MQ=255)
                                                                       tGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGa                    <  2:3119260/90‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  2:644107/90‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  1:2965742/90‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  1:3268818/90‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  1:873556/90‑1 (MQ=255)
                                                                          aaTCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTa                 >  2:1467182/1‑90 (MQ=255)
                                                                          aaTCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTa                 >  1:1867473/1‑90 (MQ=255)
                                                                           aTCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCCACAAGCTCACGGGCAAAGAGGGGGTGAttgt                >  2:128930/1‑88 (MQ=255)
                                                                             ctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCg              >  1:1699476/1‑90 (MQ=255)
                                                                             ctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCg              >  1:3356382/1‑90 (MQ=255)
                                                                               cccAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              >  1:1480577/1‑40 (MQ=255)
                                                                               cccAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:1480577/40‑1 (MQ=255)
                                                                               cccAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGc            >  1:490868/1‑90 (MQ=255)
                                                                                 cAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCAc          >  1:944461/1‑90 (MQ=255)
                                                                                 cAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCAc          <  1:2432007/90‑1 (MQ=255)
                                                                                 cAGCGGCAACCTCTTCGTCATGACGCAGACCGCCGGGATGGGCTGGGACGCCAACAAGCTAACCGGCAAAGAGGTGCTGATTATCGGCAc          <  2:576759/90‑1 (MQ=255)
                                                                                    cGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCa       <  1:383296/90‑1 (MQ=255)
                                                                                     ggCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAg      >  2:2730368/1‑90 (MQ=255)
                                                                                     ggCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACGCAg      >  2:384549/1‑90 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGc            <  2:3179194/81‑1 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGc            >  1:3179194/1‑81 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGc            <  2:1217708/81‑1 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGc            >  1:1217708/1‑81 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGggc   >  1:2881278/1‑90 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGggc   >  1:2273791/1‑90 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGggc   >  1:6104/1‑90 (MQ=255)
                                                                                         aCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGggcg  <  2:1391405/90‑1 (MQ=255)
                                                                                         |                                                                                         
CGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCG  >  NZ_CP009273/278947‑279125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.