| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 2 (0.070) | 32 (1.070) | 18/164 | 0.4 | 94.1% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 2 (0.070) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1613542‑1613630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTT > NZ_CP009273/1613634‑1613721 ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAG < 1:550911/90‑1 CCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTG > 2:444363/1‑90 AGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACA < 1:444363/90‑1 TGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA < 2:327179/90‑1 GCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG > 2:800787/1‑74 GCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG < 1:800787/74‑1 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTAC > 2:842341/1‑90 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTAC > 2:7644/1‑90 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACT > 1:816087/1‑78 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACT < 2:816087/78‑1 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG < 1:28278/72‑1 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG > 2:28278/1‑72 CTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCG > 2:161886/1‑90 CTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA < 2:305732/70‑1 CTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA > 1:305732/1‑70 GATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA < 2:259654/90‑1 GATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA < 1:7644/90‑1 GATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA < 2:663655/90‑1 GCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAT > 1:728611/1‑90 GCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAT > 2:413002/1‑90 GCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAT > 2:585252/1‑90 CCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG < 1:701871/51‑1 CCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG < 1:528035/51‑1 CCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG > 2:701871/1‑51 CCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGG > 2:528035/1‑51 TGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA > 1:282605/1‑69 TGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA < 2:282605/69‑1 GGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAAT > 2:473641/1‑90 GGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTA < 2:140332/37‑1 GGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTA > 1:140332/1‑37 GGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGT < 2:307883/90‑1 GAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTT < 2:873673/90‑1 ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1613542‑1613630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTT > NZ_CP009273/1613634‑1613721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |