| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 2 (0.070) | 32 (1.070) | 18/164 | 0.4 | 94.1% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 2 (0.070) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
CCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTT > NZ_CP009273/1613545‑1613721 | actccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggag < 1:550911‑M2/1‑1 (MQ=255) ccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTg > 2:444363‑M2/87‑90 (MQ=255) aggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACa < 1:444363‑M2/20‑1 (MQ=255) tgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa < 2:327179‑M2/38‑1 (MQ=255) gcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg > 2:800787‑M2/48‑74 (MQ=255) gcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg < 1:800787‑M2/27‑1 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg < 1:28278‑M2/27‑1 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg > 2:28278‑M2/46‑72 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACt < 2:816087‑M2/33‑1 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACt > 1:816087‑M2/46‑78 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 2:842341‑M2/46‑90 (MQ=255) actgacccgtatgctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 2:7644‑M2/46‑90 (MQ=255) gTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGc < 2:879725/45‑1 (MQ=255) gTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGc > 1:879725/1‑45 (MQ=255) ctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa < 2:305732‑M2/38‑1 (MQ=255) ctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa > 1:305732‑M2/33‑70 (MQ=255) ctggatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGgcggcgcg > 2:161886‑M2/33‑90 (MQ=255) gatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 2:259654‑M2/61‑1 (MQ=255) gatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 2:663655‑M2/61‑1 (MQ=255) gatcgcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 1:7644‑M2/61‑1 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 2:413002‑M2/26‑90 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 2:585252‑M2/26‑90 (MQ=255) gcctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAatat > 1:728611‑M2/26‑90 (MQ=255) cctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg > 2:528035‑M2/25‑51 (MQ=255) cctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg > 2:701871‑M2/25‑51 (MQ=255) cctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg < 1:701871‑M2/27‑1 (MQ=255) cctggtctgtaaaggctgggtggaGTTGCCGAACCCGAATGACAAGCgcgg < 1:528035‑M2/27‑1 (MQ=255) tgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa > 1:282605‑M2/9‑69 (MQ=255) tgggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 2:282605‑M2/61‑1 (MQ=255) gggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAAt > 2:473641‑M2/8‑90 (MQ=255) ggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTa < 2:140332‑M2/31‑1 (MQ=255) ggtggaGTTGCCGAACCCGAATGACAAGCGCGGCGTa > 1:140332‑M2/7‑37 (MQ=255) ggaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGt < 2:307883‑M2/87‑1 (MQ=255) gaGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGtt < 2:873673‑M2/88‑1 (MQ=255) | CCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTT > NZ_CP009273/1613545‑1613721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |